Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03626 ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTGTGCATAATACTAGTAAACACTGCCATGTCAATATCCATATTCAAAGGGATTATTAAAACTATCCTCCATATAATTGGTATCATTGCTTCACCACCATCATCATCCTCAACTTCAGATGATTCATTTGAGTTCCATCTCAGTCCTTCAGATGATTTCATTGAAGAGTTCAGAAGCATGACACCAACACTTAGGTTTGAGAGTGTGTGCAGTAGCTGCAAAGAGCCTGAACATGATTGTTCAGTGTGTCTCACTCAATTTGAACCAGAATCTGAGATAAACTACTGTTTATCTTGTGGACATCTTTTCCATAAAGTTTGTTTGGAGAAGTGGTTGGACTATTGGAACATTACATGTCCACTTTGTAGGACTCCTTTGATTCCTGAAGATGATGCTGCATCTTGCTTTTCATGA 453 0.3907 MGLSSLPAPSEGVLCIILVNTAMSISIFKGIIKTILHIIGIIASPPSSSSTSDDSFEFHLSPSDDFIEEFRSMTPTLRFESVCSSCKEPEHDCSVCLTQFEPESEINYCLSCGHLFHKVCLEKWLDYWNITCPLCRTPLIPEDDAASCFS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03626 150 SUPERFAMILY RING/U-box 85 142 - -
Vivi3g03626 150 SMART ringv_2 92 136 IPR011016 GO:0008270
Vivi3g03626 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 137 IPR013083 -
Vivi3g03626 150 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Vivi3g03626 150 PANTHER - 1 144 IPR044249 -
Vivi3g03626 150 SMART ring_2 93 135 IPR001841 -
Vivi3g03626 150 Pfam Ring finger domain 92 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03626 Vivi-Chr3 61310703 61312287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03626 1 147 C3H Transcription Factor Family AT2G04240 56.604 6.58e-57 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03626 K16285 - gmx:100786803 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03626 3 61310703 61312287 Vivi3g03626 3 61310703 61312287 ECH