Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03623 ATGGGATACATATGTGATTTTTGTGGAGACCAGAGGTCGATGGTGTACTGCCGATCTGATGCAGCGTGTTTATGTTTGTCGTGCGATCGAAATGTTCATTCAGCGAATACGCTTGCTCGAAGACATTCGAGGACACTTTTATGTGAGAGATGCAGTTCACAGCCTGCTTTGGTTAGGTGTTCGGAAGAGAAGATTTCACTTTGTCAGAATTGTGATTGGTTAGGCCATGGTAACTCTACGTCTTCCAATCATAAGAGACAAACAATCAATTGTTACTCAGGCTGTCCTTCGTCGGCGGAACTGTCTTCGATATGGTCTTTTGTGTTGGATATTCCTTCTCTAAGTGAAACTACTTGTGAGCAAGAACTTGGTTTCATGAGTATTAATGAGAATAGAAGTGCTTGGGTGGATCCAAAAAACCAGAATGCGTCTGATTCGGATAAAATTACTGATCAGCCTGATTTGGAAAAGTCTTTCGTCGGTACGTCTTCAATGCCCGAATCAAGCAAAGAACCACAGATGATGGACCGCCCTGATGGATCTACCAATGAACGCGCGCCAAAGTTATACTGTCCTGCTACAAAATACCCTGAAATTAGTGAAGATGATGATGATTTGTACGGCGATTTCGATATGGATGAAATGGATATAAATATGGAGAACTATGATGAACTTTTTGGTATGGCCCTCACTCATTCTGAAGAACTTTTTGAAAATGGTGGATTTAACAGCTTATTCAGAGGAAAGGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTATAGCGGCCGAGGGTTCATCGATTGGACATGTAAATGCAGCGCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCCATATTGAGTACTAAAACTGAGCCGAATTTTTGTGTTACGACAAAGCCGTCCCAATCAAGTCTTTCTTTTTCTGGTATTAATGAAGACGGTTGTGCTGGAGATTATCAAGATTGTGGAGCTTCTTCCATGTTTCTCATGGGAGAACCTCCTTGGTTAAACACGTGTCCGGAGAATGAGCTGCAGCTACAATCTGCCAACCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAAAAGACACGCAAGTTTGACAAAAGAGTGAGGTATGCATCTCGCAAGGAAAGGGCTGATGTCCGAAGACGCGTGAAGGGCCGGTTTGTCAAAGCCGGCGAGGCCTATGATTATGATCCTTTAAGCCAAACCAGAAGCTACTGA 1236 0.4345 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGNSTSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNASDSDKITDQPDLEKSFVGTSSMPESSKEPQMMDRPDGSTNERAPKLYCPATKYPEISEDDDDLYGDFDMDEMDINMENYDELFGMALTHSEELFENGGFNSLFRGKAMSAGDSNCQDAIAAEGSSIGHVNAAQPACSNAASADSILSTKTEPNFCVTTKPSQSSLSFSGINEDGCAGDYQDCGASSMFLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03623 411 MobiDBLite consensus disorder prediction 156 170 - -
Vivi3g03623 411 CDD Bbox1_BBX-like 47 89 - -
Vivi3g03623 411 MobiDBLite consensus disorder prediction 136 188 - -
Vivi3g03623 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Vivi3g03623 411 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Vivi3g03623 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Vivi3g03623 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi3g03623 411 CDD Bbox1_BBX-like 4 47 - -
Vivi3g03623 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi3g03623 411 SMART bboxneu5 48 89 IPR000315 GO:0008270
Vivi3g03623 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03623 Vivi-Chr3 61261879 61264889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03623 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 53.428 5.19e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi3g03623 CCT 7.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03623 - - gmx:100800832 639.032