Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03620 ATGGCGTCAAGAAAGTCCGATAACCCTCAATATGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCAAAAGATACATCCCTAGATACGTTTGTGAAGTACTTCGAAAGGTACGGAGAGATAACGGATTCCGTTATCATGAAGGATCGACATACCGGTCGGCCCCGAGGGTTTGGGTTCATTACTTATGCGGATCCTTCTGTCGTTGATCAAGTTATTCAGGAGAATCACATCATCAATGATAAGCAGGTTGAAATTAAGAGGACCATTCCAAAGGGTGCATCACATACTAGTGATTTCAAAACTAAGAAGATTTTCGTAGGTGGTATTCCCGCAGCAGTAACTGAAGATGAGCTCAAGGACTTCTTCTCTAAGCATGGAAATGTTGTGGAGCACGAAATTATACGTGATCATGCCACTAAAAGATCTCGTGGATTTGGTTTTGTAGTGTTTGATAATGATAAGGTTGTTGATACTTTGTTAGCTGATGGGAACATGATTGATATGGACGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAGTTCAGCTTCTTTTCCTTCATTTGGTAATGACTCTAGGTCACGTTCTTACAACGATGGTTTTGGTGGATTTGGTGATACTTATGGAGGTTTTCCCGGTGGAGGTTATGGCCCTGCTTCTTATAGGTCGCTTGGAGGTTACACTGCTAGGCTTAGCGATTATGGTGGATATGGAGGTGGAGATGACTTCAGTGGTGGTTTTGGAGGTGGTTATGGGGGCAGTGGTGGTGCTGGTGGTTATGGGGGCTATAGAGGAGAACCATCATTTGGCTACTCTGGCCGCTATGGGTCTTACATGGGGGGCCTTGGTGGTGGATATGGTGGTAGTGGTGGGTTAGGCCCATATGGGAGAGGTGGCGCAGGCTATGGAGGTTATGGTGGTTCAGGCACTAGCGGAGGTTATGAATCTGGCCCTGGTGCTGGTTTTGGTGGAACAGGAGGACTCTATTCTAGTAGGGGAGGATATGGGGGTGGTAGTCGTTACCATCCTTACACAAGATAG 1065 0.4667 MASRKSDNPQYGDGASPGKIFIGGLAKDTSLDTFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHIINDKQVEIKRTIPKGASHTSDFKTKKIFVGGIPAAVTEDELKDFFSKHGNVVEHEIIRDHATKRSRGFGFVVFDNDKVVDTLLADGNMIDMDGTQVEIKKAEPKKSSSSASFPSFGNDSRSRSYNDGFGGFGDTYGGFPGGGYGPASYRSLGGYTARLSDYGGYGGGDDFSGGFGGGYGGSGGAGGYGGYRGEPSFGYSGRYGSYMGGLGGGYGGSGGLGPYGRGGAGYGGYGGSGTSGGYESGPGAGFGGTGGLYSSRGGYGGGSRYHPYTR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03620 354 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 354 - -
Vivi3g03620 354 SUPERFAMILY RNA-binding domain, RBD 14 96 IPR035979 GO:0003676
Vivi3g03620 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 82 IPR000504 GO:0003723
Vivi3g03620 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 162 IPR000504 GO:0003723
Vivi3g03620 354 MobiDBLite consensus disorder prediction 179 201 - -
Vivi3g03620 354 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vivi3g03620 354 SMART rrm1_1 19 90 IPR000504 GO:0003723
Vivi3g03620 354 Gene3D - 98 222 IPR012677 -
Vivi3g03620 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Vivi3g03620 354 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Vivi3g03620 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vivi3g03620 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Vivi3g03620 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Vivi3g03620 354 MobiDBLite consensus disorder prediction 186 201 - -
Vivi3g03620 354 Gene3D - 18 97 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03620 Vivi-Chr3 61121756 61125470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03620 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 26.042 3.07e-14 72.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03620 3 61121756 61125470 Vivi3g03620 3 61121756 61125470 ECH
Vivi3g03620 3 61121756 61125470 Vivi7g02455 7 88405822 88410189 PCT