Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03617 ATGGTTGAAGCTTCGGGGATGATGTATACTAACACCAACACCACTCTTATTCCTGCTTTTAACCCTACAGTTCAGAGGAATCATCTTCGTTTATGTCAACTACCTCTCTCACGAAGACACCATGTCCAATTTTCACTCTCTGCAACTGCAAGTCAAGCCTCAACATTTATGGAAACTATTCCTTGGGGTTGTGAGAATGATTCGCTGGAAAACTCTTCTTCTCTTCAGAAATGGTTGTCAGAGTCAGGTCTTCCTTCTCAGAAGATGGCCATTGATAAAGTTGATGTGGGTGAGAGAGGACTTGTTGCATTGAAGAATATTAGGAAAGGAGAGAAGCTTCTCTTTGTTCCTCCTTCACTTGTCATCACTCCAGATTCTGAGTGGAGTTGTCCGGAAGCTGGCGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGCATCATGGAGTCTTCAAAATGGTTCAGTTATATATCGGCCTTACCTCGTCAACCTTACTCACTTCTATACTGGTCTCAGACTGAACTAGATCGCTACTTGGAAGCTTCGCAGATTAGGGAAAGAGCTATTGAAAGGACTAATAATGTCGTTGGAACATACAATGATATGAGGCTCAGAATATTTTCGAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGGATTCTTTTCTCTCGCATGGTTCGGTTACCCTCAATGGATGGAAAGGTGGCCTTGGTTCCTTGGGCGGATATGCTGAATCATAATTGTGAGGTGGAGACGTTTTTGGATTACGATAGATCTTCGAAGGGAATTGTCTTTACGACAGATCGCCCCTATCTACCAGGTGAGCAGGTGTTTATTTCATATGGGAATAAATCAAATGGGGAGCTTCTCTTATCTTATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGCGACTCGGTTGAGCTGCCATTCTCACTCAAGAAATCTGATGAGTCCTATGAGGAGAAGTTGGAACTGTTGAGGAAGTATGGATTATCAGGATCTCAGTGTTTTCCGTTAAGGGTCACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGGAAATTCGAAGAGATGGCTGCGATCGCATCAAATAAAACTACCTCCAATAAGAACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAGTTCATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAATAAGTTCTTACAGGCAAGTGGATCGCTGGATTTGGATGTGACTTCTCCGAAACAACTTAACCGGAGACTCTTTCTAAAACAGCTAGCCGTGGACTTGTGTACGAGCGAGCGGAGGATACTATTCCGTGCTCAATATATATTGAGAAGAAGATTGAGAGATATGAGGACTGGTGAATTAAAAGCCTTAACAATCTTCAATGGATTCAGGAAATTTTTCAAGTGA 1509 0.4195 MVEASGMMYTNTNTTLIPAFNPTVQRNHLRLCQLPLSRRHHVQFSLSATASQASTFMETIPWGCENDSLENSSSLQKWLSESGLPSQKMAIDKVDVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASIMESSKWFSYISALPRQPYSLLYWSQTELDRYLEASQIRERAIERTNNVVGTYNDMRLRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHNCEVETFLDYDRSSKGIVFTTDRPYLPGEQVFISYGNKSNGELLLSYGFVPKEGTNPSDSVELPFSLKKSDESYEEKLELLRKYGLSGSQCFPLRVTGWPLELMAYAYLAVSPSSMRGKFEEMAAIASNKTTSNKNLRYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRRLRDMRTGELKALTIFNGFRKFFK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03617 502 SUPERFAMILY SET domain 73 320 IPR046341 -
Vivi3g03617 502 Gene3D set domain protein methyltransferase, domain 1 35 316 - -
Vivi3g03617 502 ProSiteProfiles SET domain profile. 87 303 IPR001214 GO:0005515
Vivi3g03617 502 PIRSF RMT_SET 7 499 IPR011192 GO:0009507|GO:0030785
Vivi3g03617 502 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 313 500 IPR036464 -
Vivi3g03617 502 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 63 440 - -
Vivi3g03617 502 Pfam SET domain 99 303 IPR001214 GO:0005515
Vivi3g03617 502 Pfam Rubisco LSMT substrate-binding 336 469 IPR015353 -
Vivi3g03617 502 Gene3D - 322 487 IPR036464 -
Vivi3g03617 502 CDD SET_RBCMT 82 317 IPR044431 GO:0016279|GO:0018022
Vivi3g03617 502 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 54 316 - -
Vivi3g03617 502 SMART set_7 87 309 IPR001214 GO:0005515
Vivi3g03617 502 FunFam Rubisco methyltransferase family protein 322 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03617 Vivi-Chr3 61103980 61107116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03617 74 272 NAC Transcription Factor Family AT3G56570 21.891 3.02e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi3g03617 SET 5.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03617 - - cam:101500121 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03617 3 61103980 61107116 Vivi3g03617 3 61103980 61107116 ECH