Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03612 ATGACGAATATGCATGTAAATTCTACTGGGACGAGTTCTGATATAATTGAAATGGCTCATGATGCAGAAAATTTCAACAGTAGACTACAATTGCAGCCTACCTTAGAGCCATACGAAGGAATGGAATTTGTATCATTTGAAGAAGCAAAAACTTACTATACAAGGTATGCAAAAAATAAAGGTTTTAGTTTTCGAATGGGTCGTATTACTAAATCAAGAACAAATGGATTGATAATTGGTCAAGAGATTGTTTGTTCAAAGGAGGGGTTTCGGGCTAAAAGTTATGCAAAAGGGGAAAATAACAAACCTGCAACTCAAGATGAAACAAGGGTAGGATGCAAGGCAATGATATACCTAAAGAAAAATGAAGATAGATGGAATATCTCTAAATTTATAAGAGAGCATAATCATGAGTTATTCTCCCCAAGAAGTTCACAGTTCCTTCGAGTGCATAGAAAAAAGACTAAAGTACAAAAAAAACTTATTGATGTGCTAGATGATTCAGGATTGCGTCCTAGCAAAATAACATCTGTCTTAAGTACTGAAAGTGGTGGTATTGATAATATTGGATTTAGTCAGCAAGACGTTGTTGATTACTTAAGTCAAAAGAGACAAAAACAGATCGAAAAAGGAGACGCTCAATTGATGTTATCATATTTTAAGAATTGTCAATTAAGGAATCCTGGATTTTTTTATGCTTTTCAAATGGATGTGGACGGTCATTTAGCTAATTGCTTTTGGGTTGATTCAAGATCCAAAATGAGTTATAAATATTTTGGTGATGTGGTAACTTTTGATCCAACATATTTAACAAATAGATACAAAATGCCCTTTGTTCCGTTCACCGGAGTTAATCATCATCAACAATCCATTCTTTTTGGTTGTGCATTGTTGTGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGCTAAGTACATGGTTAGAAGCAATGTCTGGAGTTTGTCCTAAAACAATTATCACCGACCAAGATGCTGCTATCACTAATGCTGTTGCAAGAGTGTTTCCAAATGCTAATCATCACTACTGTATGTGGCACATTGAAAAAAAAGTTCCAGAATACTTGAACAATGTTTGTCATGAATACAATGATTTTAAAAATCAATTTCATAAGTGTATTCACCAATCAGTCACTGTTGAGGATTTTGAATCAGATTGGGAAGCAATGATAGATAAATATGGATTGCAAGACAATCAATGGCTTCAAAAGATATACTATATTCGATCAAAATGGATTCCGGTTTATGTACGTAACAATTTTTGTGCTGGAATGTCCACCACTCAAAGAAGTGAAAGTATGAATAAGTTCTTTAAGGATTTTTTGAATTCTAGTACTCCATTGAACAAGTTTGTGACACAGTATGATAAGGCTCTTGATGCACGTTATAACAAGGAAAGGGAGAAGACTTTCAAGACAATCAATTCAAAACCATTTTTGCGAACTTTATATCCTATGGAAGAAGAAGCTTCAAAAATCTTTACAAGAAAATTGTTTAGAATTTTTCAAGATGAATTAGTTGGTTCTCAGAAGTTTATTGCAGAGAAAGTTGAATTTTCTAGTGATCTTTCCACCTACAAGGTTCATGAGATTTACAAAGAGAAACCTAACTACTATGTGACTTTTCACATTATTTCGAATGAAGCGAATTGTAGTTGTCACATGTTTGAGTTTTTGGGTATTCTTTGTCGGCATGCATTAAATGTACTCCTAAAGAAAAATATTTTTTCTCTTCCTTCAAAGTATATGCTTCGTCGTTGGACTATTGATGCTAAAAAGGAGCAAGTTATAGAACCAACAATAAATCAATTTCAAGATGGTAGCTATGAATCTTCGAGTACTTTATTATTCAATAGTATTATGATTCATTCGTTGGGAGTATCTGAAAGAGGTTCACGGTCTCAAAAGCATCACGATGTTACAATTCAAGGTTTTCAAAAGATAATCGAAGAGCTTGATTTGTTGGATCTTAAGGATTCAAATGAAGATCTTGGTAATTCAACATCAGAGGTTATTCCAAAAGCCTTTTGCAATGAAATACTTGTGCGTGACCCTCCAGTTGCGGCCACTAAAGGGCGTCCTCGAACACTCCGAATGAAAGGAAGCTTGGAATTGCGCAATAAAAGTGCATCTGTATGTAGTTATTGCAAGAATAAAGGTCATAACAAGCGTAAATGTCCAAATTTAAATCAAACAAGGTGA 2217 0.3415 MTNMHVNSTGTSSDIIEMAHDAENFNSRLQLQPTLEPYEGMEFVSFEEAKTYYTRYAKNKGFSFRMGRITKSRTNGLIIGQEIVCSKEGFRAKSYAKGENNKPATQDETRVGCKAMIYLKKNEDRWNISKFIREHNHELFSPRSSQFLRVHRKKTKVQKKLIDVLDDSGLRPSKITSVLSTESGGIDNIGFSQQDVVDYLSQKRQKQIEKGDAQLMLSYFKNCQLRNPGFFYAFQMDVDGHLANCFWVDSRSKMSYKYFGDVVTFDPTYLTNRYKMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLSTWLEAMSGVCPKTIITDQDAAITNAVARVFPNANHHYCMWHIEKKVPEYLNNVCHEYNDFKNQFHKCIHQSVTVEDFESDWEAMIDKYGLQDNQWLQKIYYIRSKWIPVYVRNNFCAGMSTTQRSESMNKFFKDFLNSSTPLNKFVTQYDKALDARYNKEREKTFKTINSKPFLRTLYPMEEEASKIFTRKLFRIFQDELVGSQKFIAEKVEFSSDLSTYKVHEIYKEKPNYYVTFHIISNEANCSCHMFEFLGILCRHALNVLLKKNIFSLPSKYMLRRWTIDAKKEQVIEPTINQFQDGSYESSSTLLFNSIMIHSLGVSERGSRSQKHHDVTIQGFQKIIEELDLLDLKDSNEDLGNSTSEVIPKAFCNEILVRDPPVAATKGRPRTLRMKGSLELRNKSASVCSYCKNKGHNKRKCPNLNQTR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03612 738 ProSiteProfiles Zinc finger SWIM-type profile. 543 579 IPR007527 GO:0008270
Vivi3g03612 738 Pfam MULE transposase domain 262 356 IPR018289 -
Vivi3g03612 738 Pfam FAR1 DNA-binding domain 51 140 IPR004330 -
Vivi3g03612 738 SUPERFAMILY Retrovirus zinc finger-like domains 712 735 IPR036875 GO:0003676|GO:0008270
Vivi3g03612 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 656 IPR031052 GO:0006355
Vivi3g03612 738 Pfam SWIM zinc finger 551 579 IPR007527 GO:0008270
Vivi3g03612 738 SMART 26again6 554 581 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03612 Vivi-Chr3 61072786 61076322 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g03612 MULE 1.3e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03612 - - vvo:131646886 1166.37