Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03611 ATGACGAATATGCATGTAAATTCTACTGGGACGAGTTCTGATATAATTGAAATGGCTCATGATGCAGAAAATTTCAACAGTAGACTACAATTGCAGCCTACCTTAGAGCCATACGAAGGAATGGAATTTGTATCATTTGAAGAAGCAAAAACTTACTATACAAGGTATGCAAAAAATAAAGGTTTTAGTTTTCGAATGGGTCGTATTACTAAATCAAGAACAAATGGATTGATAATTGGTCAAGAGATTGTTTGTTCAAAGGAGGGGTTTCGGGCTAAAAGTTATGCAAAAGGGGAAAATAACAAACCTGCAACTCAAGATGAAACAAGGGTAGGATGCAAGGCAATGATATACCTAAAGAAAAATGAAGATAGATGGAATATCTCTAAATTTATAAGAGAGCATAATCATGAGTTATTCTCCCCAAGAAGTTCACAGTTCCTTCGAGTGCATAGAAAAAAGACTAAAGTACAAAAAAAACTTATTGATGTGCTAGATGATTCAGGATTGCGTCCTAGCAAAATAACATCTGTCTTAAGTACTGAAAGTGGTGGTATTGATAATATTGGATTTAGTCAGCAAGACGTTGTTGATTACTTAAGTCAAAAGAGACAAAAACAGATCGAAAAAGGAGACGCTCAATTGATGTTATCATATTTTAAGAATTGTCAATTAAGGAATCCTGGATTTTTTTATGCTTTTCAAATGGATGTGGACGGTCATTTAGCTAATTGCTTTTGGGTTGATTCAAGATCCAAAATGAGTTATAAATATTTTGGTGATGTGGTAACTTTTGATCCAACATATTTAACAAATAGATACAAAATGCCCTTTGTTCCGTTCACCGGAGTTAATCATCATCAACAATCCATTCTTTTTGGTTGTGCATTGTTGTGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGCTAAGTACATGGTTAGAAGCAATGTCTGGAGTTTGTCCTAAAACAATTATCACCGACCAAGATGCTGCTATCACTAATGCTGTTGCAAGAGTGTTTCCAAATGCTAATCATCACTACTGTATGTGGCACATTGAAAAAAAAGTTCCAGAATACTTGAACAATGTTTGTCATGAATACAATGATTTTAAAAATCAATTTCATAAGTGTATTCACCAATCAGTCACTGTTGAGGATTTTGAATCAGATTGGGAAGCAATGATAGATAAATATGGATTGCAAGACAATCAATGGCTTCAAAAGATATACTATATTCGATCAAAATGGATTCCGGTTTATGTACGTAACAATTTTTGTGCTGGAATGTCCACCACTCAAAGAAGTGAAAGTATGAATAAGTTCTTTAAGGATTTTTTGAATTCTAGTACTCCATTGAACAAGTTTGTGACACAGTATGATAAGGCTCTTGATGCACGTTATAACAAGGAAAGGGAGAAGACTTTCAAGACAATCAATTCAAAACCATTTTTGCGAACTTTATATCCTATGGAAGAAGAAGCTTCAAAAATCTTTACAAGAAAATTGTTTAGAATTTTTCAAGATGAATTAGTTGGTTCTCAGAAGTTTATTGCAGAGAAAGTTGAATTTTCTAGTGATCTTTCCACCTACAAGGTTCATGAGATTTACAAAGAGAAACCTAACTACTATGTGACTTTTCACATTATTTCGAATGAAGCGAATTGTAGTTGTCACATGTTTGAGTTTTTGGGTATTCTTTGTCGGCATGCATTAAATGTACTCCTAAAGAAAAATATTTTTTCTCTTCCTTCAAAGTATATGCTTCGTCGTTGGACTATTGATGCTAAAAAGGAGCAAGTTATAGAACCAACAATAAATCAATTTCAAGATGGTAGCTATGAATCTTCGAGTACTTTATTATTCAATAGTATTATGATTCATTCGTTGGGAGTATCTGAAAGAGGTTCACGGTCTCAAAAGCATCACGATGTTACAATTCAAGGTTTTCAAAAGATAATCGAAGAGCTTGATTTGTTGGATCTTAAGGATTCAAATGAAGATCTTGGTAATTCAACATCAGAGGTTATTCCAAAAGCCTTTTGCAATGAAATACTTGTGCGTGACCCTCCAGTTGCGGCCACTAAAGGGCGTCCTCGAACACTCCGAATGAAAGGAAGCTTGGAATTGCGCAATAAAAGTGCATCTGTATGTAGTTATTGCAAGAATAAAGGTCATAACAAGCGTAAATGTCCAAATTTAAATCAAACAAGGTGTGATATTATTAATGGACAATTTTCAAACGCTAATGGTAAAGATTCTACTGTTGATTTTATTCAAAGGTGA 2286 0.3395 MTNMHVNSTGTSSDIIEMAHDAENFNSRLQLQPTLEPYEGMEFVSFEEAKTYYTRYAKNKGFSFRMGRITKSRTNGLIIGQEIVCSKEGFRAKSYAKGENNKPATQDETRVGCKAMIYLKKNEDRWNISKFIREHNHELFSPRSSQFLRVHRKKTKVQKKLIDVLDDSGLRPSKITSVLSTESGGIDNIGFSQQDVVDYLSQKRQKQIEKGDAQLMLSYFKNCQLRNPGFFYAFQMDVDGHLANCFWVDSRSKMSYKYFGDVVTFDPTYLTNRYKMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLSTWLEAMSGVCPKTIITDQDAAITNAVARVFPNANHHYCMWHIEKKVPEYLNNVCHEYNDFKNQFHKCIHQSVTVEDFESDWEAMIDKYGLQDNQWLQKIYYIRSKWIPVYVRNNFCAGMSTTQRSESMNKFFKDFLNSSTPLNKFVTQYDKALDARYNKEREKTFKTINSKPFLRTLYPMEEEASKIFTRKLFRIFQDELVGSQKFIAEKVEFSSDLSTYKVHEIYKEKPNYYVTFHIISNEANCSCHMFEFLGILCRHALNVLLKKNIFSLPSKYMLRRWTIDAKKEQVIEPTINQFQDGSYESSSTLLFNSIMIHSLGVSERGSRSQKHHDVTIQGFQKIIEELDLLDLKDSNEDLGNSTSEVIPKAFCNEILVRDPPVAATKGRPRTLRMKGSLELRNKSASVCSYCKNKGHNKRKCPNLNQTRCDIINGQFSNANGKDSTVDFIQR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03611 761 ProSiteProfiles Zinc finger SWIM-type profile. 543 579 IPR007527 GO:0008270
Vivi3g03611 761 Pfam MULE transposase domain 262 356 IPR018289 -
Vivi3g03611 761 SUPERFAMILY Retrovirus zinc finger-like domains 712 737 IPR036875 GO:0003676|GO:0008270
Vivi3g03611 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 656 IPR031052 GO:0006355
Vivi3g03611 761 SMART 26again6 554 581 IPR006564 GO:0008270
Vivi3g03611 761 Pfam SWIM zinc finger 551 579 IPR007527 GO:0008270
Vivi3g03611 761 Pfam FAR1 DNA-binding domain 51 140 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03611 Vivi-Chr3 61072786 61076322 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g03611 MULE 1.4e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03611 - - vvo:131646886 1185.24