Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03604 ATGGGTAGGTGCCGAACAGCAGCGCGCTCTGGAGACGACGACCCTAACCAGAGGTTTCATCAACTTTTACAATTCTCATCCAAGAGAAAAAAGGCTGCTTTAAATGCTGAGAATGTAGAAACTTCATCAGCAGGCATAGGAATAACTGATGGCAAGGTATCATTATATCACTGTAATTACTGCAACAAAGATATTTCAGGGAAGATTCGCATCAAATGTGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAATTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCGGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGGAATTGGAATGAAGTTGCAGACAATGTTGGAACGAAAAGCAAATCGCAGTGTATTGATCACTATAATGCTGAATATCTGAATTCACCATGTTTTCCTCTACCTGATTTGTCTCATGTTATGGGAAAGAACAAAGAGGAACTCCTTGCCATGGCTACAGGATATCAAGTCAAGAAAGAGTTTTCTCCAAATGCAGAGCTGACTTTGAAAGAAGAACCTCTCTTTTCTAATGGAATAAACTCTGAAGAATCTACGAAGGCAGCAACCACTAATCAAACGACGTCTAGGCTAACCTCAGCAAGTGGTAAAGCACTTTCAAGTTCAATCAAGAAGGCGGCTTCCAATAAGAGTCAGAATAATGATGGAGTTAAGGTGGAAGTTAAAGTGGAAGAACCTCAAGCAGGTCGGAGCATTGGTGAAAAGAAGCCTAAATTATCTGGGGAATATAGGCCTTCTATGAAAGCGTTGAGCGGATACAATTCTAAGAGAGGTGAATTTGATGTTGAATACGACAATGACGCTGAGCAAGTTTTAGCAGAAATGGAGTTTAAAGACACTGATACTGAAGCTGAACGTGAAACAAAACTGCAAGTGCTGCGTATCTACTCAAAAAGGTTAGACGAACGCAAGCGCAGAAAAAATTTTATACTTGACAGGAATTTACTTTGTCCTGATCCTTTTGAGAAATCGCTTTCACCCGAAGAGCTTAAAATATGTCAAAAGTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAACACGAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTGTCAAAAGAATACAAGACTTGCAGGAAGCTCGAATTTCTGGCTGTGTAACTGCTGCTGATGCTTATCAATTTATTGAACAAAAGAGTACAAAAGAAGCTGAACAAGGTGGTCAGATTGGAACAAGTGGAAAGACTTTACAGAGGCCAAATTTTCCCAAAGTAGAGCTCGGCAGTAGCCCACGCGATTCCAAGGATACACCGACGGCCGTACAAACCATCACAAGGACCCTTGAAGAATGGGATATCAGTGATTTTGAAGGGGCTGAATTACTATCTGAATCTGAGATAAAGCTTTGTAATGAGGTCAGATTGCTACCGCCGCACTTCCTCCGCATAAAGCAGACCATGCAATTAGGAATTTCAAAGGGCAGTATAACCAAGAAATCTGATGCATATCCACTGTTCAAGTTCTCTTCAAGCAAGATTGATAGGATTTATGATATGCTTATGGAAAAAGGAGCTGGCCAAGCATAA 1674 0.4062 MGRCRTAARSGDDDPNQRFHQLLQFSSKRKKAALNAENVETSSAGIGITDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNEVADNVGTKSKSQCIDHYNAEYLNSPCFPLPDLSHVMGKNKEELLAMATGYQVKKEFSPNAELTLKEEPLFSNGINSEESTKAATTNQTTSRLTSASGKALSSSIKKAASNKSQNNDGVKVEVKVEEPQAGRSIGEKKPKLSGEYRPSMKALSGYNSKRGEFDVEYDNDAEQVLAEMEFKDTDTEAERETKLQVLRIYSKRLDERKRRKNFILDRNLLCPDPFEKSLSPEELKICQKYKVFMRFHSKEEHEELLKTIIEEHRLVKRIQDLQEARISGCVTAADAYQFIEQKSTKEAEQGGQIGTSGKTLQRPNFPKVELGSSPRDSKDTPTAVQTITRTLEEWDISDFEGAELLSESEIKLCNEVRLLPPHFLRIKQTMQLGISKGSITKKSDAYPLFKFSSSKIDRIYDMLMEKGAGQA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03604 557 SUPERFAMILY Homeodomain-like 468 553 IPR009057 -
Vivi3g03604 557 SUPERFAMILY RING/U-box 56 119 - -
Vivi3g03604 557 Gene3D - 471 555 IPR036388 -
Vivi3g03604 557 ProSiteProfiles SANT domain profile. 111 163 IPR017884 -
Vivi3g03604 557 Gene3D - 114 158 - -
Vivi3g03604 557 CDD ZZ_ADA2 56 104 IPR041983 -
Vivi3g03604 557 Gene3D - 51 104 IPR043145 -
Vivi3g03604 557 ProSiteProfiles SWIRM domain profile. 471 557 IPR007526 GO:0005515
Vivi3g03604 557 FunFam Transcriptional adapter 2 109 161 - -
Vivi3g03604 557 SMART sant 112 161 IPR001005 -
Vivi3g03604 557 MobiDBLite consensus disorder prediction 432 467 - -
Vivi3g03604 557 ProSitePatterns Zinc finger ZZ-type signature. 58 85 IPR000433 GO:0008270
Vivi3g03604 557 MobiDBLite consensus disorder prediction 208 255 - -
Vivi3g03604 557 ProSiteProfiles Zinc finger ZZ-type profile. 53 109 IPR000433 GO:0008270
Vivi3g03604 557 FunFam Transcriptional adapter 49 104 - -
Vivi3g03604 557 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 56 552 - -
Vivi3g03604 557 Pfam Myb-like DNA-binding domain 115 156 IPR001005 -
Vivi3g03604 557 MobiDBLite consensus disorder prediction 256 279 - -
Vivi3g03604 557 MobiDBLite consensus disorder prediction 432 448 - -
Vivi3g03604 557 ProSiteProfiles Myb-like domain profile. 116 159 IPR001005 -
Vivi3g03604 557 Pfam Zinc finger, ZZ type 56 95 IPR000433 GO:0008270
Vivi3g03604 557 SUPERFAMILY Homeodomain-like 109 161 IPR009057 -
Vivi3g03604 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 164 IPR017930 -
Vivi3g03604 557 FunFam Transcriptional adapter 2 472 556 - -
Vivi3g03604 557 PIRSF Txn_adaptor_ADA2 44 557 IPR016827 GO:0003713|GO:0006357|GO:0035065
Vivi3g03604 557 MobiDBLite consensus disorder prediction 208 279 - -
Vivi3g03604 557 SMART zz_5 52 96 IPR000433 GO:0008270
Vivi3g03604 557 CDD SANT 116 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03604 Vivi-Chr3 60988607 60994949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03604 1 557 EF-hand Containing Proteins AT3G07740 51.646 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g03604 Myb_DNA-binding 7.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03604 K11314 - gmx:100779424 784.637