Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03603 ATGGGTAGGTGCCGAACAGCAGCGCGCTCTGGAGACGACGACCCTAACCAGAGATCCAAGAGAAAAAAGGCTGCTTTAAATGCTGAGAATGTAGAAACTTCATCAGCAGGCATAGGAATAACTGATGGCAAGGTATCATTATATCACTGTAATTACTGCAACAAAGATATTTCAGGGAAGATTCGCATCAAATGTGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAATTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCGGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGGAATTGGAATGAAGTTGCAGACAATGTTGGAACGAAAAGCAAATCGCAGTGTATTGATCACTATAATGCTGAATATCTGAATTCACCATGTTTTCCTCTACCTGATTTGTCTCATGTTATGGGAAAGAACAAAGAGGAACTCCTTGCCATGGCTACAGGATATCAAGTCAAGAAAGAGTTTTCTCCAAATGCAGAGCTGACTTTGAAAGAAGAACCTCTCTTTTCTAATGGAATAAACTCTGAAGAATCTACGAAGGCAGCAACCACTAATCAAACGACGTCTAGGCTAACCTCAGCAAGTGGTAAAGCACTTTCAAGTTCAATCAAGAAGGCGGCTTCCAATAAGAGTCAGAATAATGATGGAGTTAAGGTGGAAGTTAAAGTGGAAGAACCTCAAGCAGGTCGGAGCATTGGTGAAAAGAAGCCTAAATTATCTGGGGAATATAGGCCTTCTATGAAAGCGTTGAGCGGATACAATTCTAAGAGAGGTGAATTTGATGTTGAATACGACAATGACGCTGAGCAAGTTTTAGCAGAAATGGAGTTTAAAGACACTGATACTGAAGCTGAACGTGAAACAAAACTGCAAGTGCTGCGTATCTACTCAAAAAGGTTAGACGAACGCAAGCGCAGAAAAAATTTTATACTTGACAGGAATTTACTTTGTCCTGATCCTTTTGAGAAATCGCTTTCACCCGAAGAGCTTAAAATATGTCAAAAGTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAACACGAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTGTCAAAAGAATACAAGACTTGCAGGAAGCTCGAATTTCTGGCTGTGTAACTGCTGCTGATGCTTATCAATTTATTGAACAAAAGAGTACAAAAGAAGCTGAACAAGGTGGTCAGATTGGAACAAGTGGAAAGACTTTACAGAGGCCAAATTTTCCCAAAGTAGAGCTCGGCAGTAGCCCACGCGATTCCAAGGATACACCGACGGCCGTACAAACCATCACAAGGACCCTTGAAGAATGGGATATCAGTGATTTTGAAGGGGCTGAATTACTATCTGAATCTGAGATAAAGCTTTGTAATGAGGTCAGATTGCTACCGCCGCACTTCCTCCGCATAAAGCAGACCATGCAATTAGGAATTTCAAAGGGCAGTATAACCAAGAAATCTGATGCATATCCACTGTTCAAGTTCTCTTCAAGCAAGATTGATAGGATTTATGATATGCTTATGGAAAAAGGAGCTGGCCAAGCATAA 1650 0.4079 MGRCRTAARSGDDDPNQRSKRKKAALNAENVETSSAGIGITDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNEVADNVGTKSKSQCIDHYNAEYLNSPCFPLPDLSHVMGKNKEELLAMATGYQVKKEFSPNAELTLKEEPLFSNGINSEESTKAATTNQTTSRLTSASGKALSSSIKKAASNKSQNNDGVKVEVKVEEPQAGRSIGEKKPKLSGEYRPSMKALSGYNSKRGEFDVEYDNDAEQVLAEMEFKDTDTEAERETKLQVLRIYSKRLDERKRRKNFILDRNLLCPDPFEKSLSPEELKICQKYKVFMRFHSKEEHEELLKTIIEEHRLVKRIQDLQEARISGCVTAADAYQFIEQKSTKEAEQGGQIGTSGKTLQRPNFPKVELGSSPRDSKDTPTAVQTITRTLEEWDISDFEGAELLSESEIKLCNEVRLLPPHFLRIKQTMQLGISKGSITKKSDAYPLFKFSSSKIDRIYDMLMEKGAGQA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03603 549 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Vivi3g03603 549 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Vivi3g03603 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 156 IPR017930 -
Vivi3g03603 549 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Vivi3g03603 549 Gene3D - 463 547 IPR036388 -
Vivi3g03603 549 Pfam Zinc finger, ZZ type 48 87 IPR000433 GO:0008270
Vivi3g03603 549 FunFam Transcriptional adapter 2 101 153 - -
Vivi3g03603 549 Gene3D - 43 96 IPR043145 -
Vivi3g03603 549 PIRSF Txn_adaptor_ADA2 36 549 IPR016827 GO:0003713|GO:0006357|GO:0035065
Vivi3g03603 549 FunFam Transcriptional adapter 41 96 - -
Vivi3g03603 549 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Vivi3g03603 549 CDD ZZ_ADA2 48 96 IPR041983 -
Vivi3g03603 549 MobiDBLite consensus disorder prediction 424 459 - -
Vivi3g03603 549 SUPERFAMILY RING/U-box 48 111 - -
Vivi3g03603 549 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 544 - -
Vivi3g03603 549 FunFam Transcriptional adapter 2 464 548 - -
Vivi3g03603 549 ProSiteProfiles SWIRM domain profile. 463 549 IPR007526 GO:0005515
Vivi3g03603 549 MobiDBLite consensus disorder prediction 200 247 - -
Vivi3g03603 549 MobiDBLite consensus disorder prediction 248 271 - -
Vivi3g03603 549 MobiDBLite consensus disorder prediction 424 440 - -
Vivi3g03603 549 SUPERFAMILY Homeodomain-like 460 545 IPR009057 -
Vivi3g03603 549 SMART zz_5 44 88 IPR000433 GO:0008270
Vivi3g03603 549 SUPERFAMILY Homeodomain-like 101 153 IPR009057 -
Vivi3g03603 549 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g03603 549 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Vivi3g03603 549 Gene3D - 106 150 - -
Vivi3g03603 549 SMART sant 104 153 IPR001005 -
Vivi3g03603 549 CDD SANT 108 148 IPR001005 -
Vivi3g03603 549 MobiDBLite consensus disorder prediction 200 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03603 Vivi-Chr3 60988528 60994949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03603 1 549 EF-hand Containing Proteins AT3G07740 52.281 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g03603 Myb_DNA-binding 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03603 K11314 - gmx:100779424 788.875