Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03594 ATGAGCTTCATCGACGACGGCATCGACTTAGACCCCTCCGATTTCGGCACATCAGTCCCTTTAAAGAAAGTCCCTAACGGCGACGTATTCCAAGCCTCCCGCGCCGGCGACGTCGACCGTCTCCGGTACCTTCTAGAATGCGGCGTTAACGTCAACGCACGTGATCAATGGGACTCCGTCGCACTCTACTACGCTTGCCTCGCCGGTCACCTCGACGCCGCTCGTATGCTTCTCGAAAGCGGCGCTATTTGCTCCGAACATACCTTTGACGGTGACCGCTGTCATTACTCCGCTCTTAATTTGAAGGTTCGGAAATTGCTCAAAGCGTTTGAAGCTCGGCCTCCGCCGCTGAATCCCTTGCAGTCTTCTCTGAGGGATACTTTCTTTGCTTGCCCGGCTAATTCGCAGTCTGGTGGCTTTCAGTTTTCCGGTATTCCAACCACTCAAGGGTTAAGTTCCAATTACTTTCCTCCAGATGTAGTTTTTACTGTACAAGGAAGACCTATTGAAGCTCACAGGGTCATATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAATTTGAGACTGATTGGAAAGAGCGCAGTGAAGTAAGACTTTCACGGGAAAAACTGTCATATCCCGCACTTTATAGCCTTATAAATTTCTTTTATTCAGACAGATTAGAGATTGCTGTGGATGACATGGATGGTCTTGTGAGAATTTGCAAAGTATGCAAATGTGAATCTCTACAGAAAATTCTCGAGAAAGAATTGGCTCATCAAAAATATGCACTGTATAAAGCTTTGAGTGATGTAGACAATTCTCAGAAACGGTTTATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCCGCTGCCTTGCGCAGAATCCTTCTGACAGCCCTTTCAAATTCCATTCATGAGAATGGTCAAGATAATGGAATCGATAAATTGGTATCTAAGATGGATTCCATGCAGATAGATAAACCTCTAAATGATCTTGCTGATGTTTGCATAAGAGTTGATAAAAAAAATTTCCGCTGCCATAAAGTTATTTTAGCATCAAGGTCAGAATATTTCAAAGCTAGACTATCACGTATGAAGGATTTCCATGAAGGGAAAGATGAATTGTATATGGACTCCCTTCCTTGTCTTGAAGAACATGACATGAGTGTGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGATCGTTTGCAGGAGATAAATCCAGATCAGGCTGAGGAAATGTTTGATATTGCTTCTAGATACTTGATGTTTCCTCTTAAGCGTGCAGTGGCTGATGTCTTGGTGCCACACTTGGAAATGGCGTCACCTGAAGAACTTTGCCAGTGGTTAATGCTAGCTGACATGTATGGTGTTTTGAAGATTCGGGAATTCTGCCTAGATACCATTGCCTGTAATTTTGAATTATTTGCGGATACTAAAGAATTCAGGGCCATGCTGCTGACTTTGCCTGCACCATCTGGAGACTCATCTCTTCGTACCACTGTCCCAAGCATGCCTGGATCTACCCTAAATAACGATCAAGGAAATCTTCTCGATGATTTACGTGATAAATGGCTTGAAATTGAAGCTGCTGAACTCGACGAGAGAGATGATAGTGCTTTGCAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTTGCAGAGCATGAAAAGTCATCAGGAGATGTTGATTCAAATTGTGCTAATGATGTTCCATCCTTGGCTTTCTCTTCAATCACTCCTGTAATTTCAGGCGAACAAAGAGAACCGTAG 1770 0.4333 MSFIDDGIDLDPSDFGTSVPLKKVPNGDVFQASRAGDVDRLRYLLECGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYSALNLKVRKLLKAFEARPPPLNPLQSSLRDTFFACPANSQSGGFQFSGIPTTQGLSSNYFPPDVVFTVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRLSREKLSYPALYSLINFFYSDRLEIAVDDMDGLVRICKVCKCESLQKILEKELAHQKYALYKALSDVDNSQKRFILQGLSLPEEDRLPAALRRILLTALSNSIHENGQDNGIDKLVSKMDSMQIDKPLNDLADVCIRVDKKNFRCHKVILASRSEYFKARLSRMKDFHEGKDELYMDSLPCLEEHDMSVEAFEKMIEYMYTDRLQEINPDQAEEMFDIASRYLMFPLKRAVADVLVPHLEMASPEELCQWLMLADMYGVLKIREFCLDTIACNFELFADTKEFRAMLLTLPAPSGDSSLRTTVPSMPGSTLNNDQGNLLDDLRDKWLEIEAAELDERDDSALQFDKRLEMLMLVAEHEKSSGDVDSNCANDVPSLAFSSITPVISGEQREP 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03594 589 CDD BACK 441 484 - -
Vivi3g03594 589 Gene3D Potassium Channel Kv1.1; Chain A 148 270 IPR011333 -
Vivi3g03594 589 Gene3D Potassium Channel Kv1.1; Chain A 307 469 IPR011333 -
Vivi3g03594 589 SMART BTB_4 158 255 IPR000210 GO:0005515
Vivi3g03594 589 SMART BTB_4 330 437 IPR000210 GO:0005515
Vivi3g03594 589 FunFam BTB/POZ domain-containing protein 23 141 - -
Vivi3g03594 589 SUPERFAMILY Ankyrin repeat 31 109 IPR036770 -
Vivi3g03594 589 Gene3D - 29 114 IPR036770 -
Vivi3g03594 589 Pfam Ankyrin repeats (many copies) 30 78 IPR002110 GO:0005515
Vivi3g03594 589 ProSiteProfiles BTB domain profile. 330 406 IPR000210 GO:0005515
Vivi3g03594 589 SUPERFAMILY POZ domain 152 253 IPR011333 -
Vivi3g03594 589 ProSiteProfiles BTB domain profile. 158 225 IPR000210 GO:0005515
Vivi3g03594 589 SUPERFAMILY POZ domain 327 436 IPR011333 -
Vivi3g03594 589 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 553 IPR044515 -
Vivi3g03594 589 Pfam BTB/POZ domain 155 254 IPR000210 GO:0005515
Vivi3g03594 589 Pfam BTB/POZ domain 328 433 IPR000210 GO:0005515
Vivi3g03594 589 FunFam BTB/POZ domain-containing protein 152 274 - -
Vivi3g03594 589 CDD BTB_POZ_ZBTB_KLHL-like 329 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03594 Vivi-Chr3 60886611 60893213 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi3g03594 BTB 9.2e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03594 K10520 - gmx:100812009 895.19