Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03590 ATGGACACACATTTTTTTAGAGTTGTCGGTGCTATAGAGATGGTAGAAGGCGGTTCAAGGCAGCAAGCCAAAAATCCACCAAAACATATGGTGGATGGTATTCCAACCACTCAAGGGTTAAGTTCCAATTACTTTCCTCCAGATGTAGTTTTTACTGTACAAGGAAGACCTATTGAAGCTCACAGGGTCATATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAATTTGAGACTGATTGGAAAGAGCGCAGTGAAGTAAGACTTTCACGGGAAAAACTGTCATATCCCGCACTTTATAGCCTTATAAATTTCTTTTATTCAGACAGATTAGAGATTGCTGTGGATGACATGGATGGTCTTGTGAGAATTTGCAAAGTATGCAAATGTGAATCTCTACAGAAAATTCTCGAGAAAGAATTGGCTCATCAAAAATATGCACTGTATAAAGCTTTGAGTGATGTAGACAATTCTCAGAAACGGTTTATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCCGCTGCCTTGCGCAGAATCCTTCTGACAGCCCTTTCAAATTCCATTCATGAGAATGGTCAAGATAATGGAATCGATAAATTGGTATCTAAGATGGATTCCATGCAGATAGATAAACCTCTAAATGATCTTGCTGATGTTTGCATAAGAGTTGATAAAAAAAATTTCCGCTGCCATAAAGTTATTTTAGCATCAAGGTCAGAATATTTCAAAGCTAGACTATCACGTATGAAGGATTTCCATGAAGGGAAAGATGAATTGTATATGGACTCCCTTCCTTGTCTTGAAGAACATGACATGAGTGTGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGATCGTTTGCAGGAGATAAATCCAGATCAGGCTGAGGAAATGTTTGATATTGCTTCTAGATACTTGATGTTTCCTCTTAAGCGTGCAGTGGCTGATGTCTTGGTGCCACACTTGGAAATGGCGTCACCTGAAGAACTTTGCCAGTGGTTAATGCTAGCTGACATGTATGGTGTTTTGAAGATTCGGGAATTCTGCCTAGATACCATTGCCTGTAATTTTGAATTATTTGCGGATACTAAAGAATTCAGGGCCATGCTGCTGACTTTGCCTGCACCATCTGGAGACTCATCTCTTCGTACCACTGTCCCAAGCATGCCTGGATCTACCCTAAATAACGATCAAGGAAATCTTCTCGATGATTTACGTGATAAATGGCTTGAAATTGAAGCTGCTGAACTCGACGAGAGAGATGATAGTGCTTTGCAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTTGCAGAGCATGAAAAGTCATCAGGAGATGTTGATTCAAATTGTGCTAATGATGTTCCATCCTTGGCTTTCTCTTCAATCACTCCTGTAATTTCAGGCGAACAAAGAGAACCGTAG 1437 0.3987 MDTHFFRVVGAIEMVEGGSRQQAKNPPKHMVDGIPTTQGLSSNYFPPDVVFTVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRLSREKLSYPALYSLINFFYSDRLEIAVDDMDGLVRICKVCKCESLQKILEKELAHQKYALYKALSDVDNSQKRFILQGLSLPEEDRLPAALRRILLTALSNSIHENGQDNGIDKLVSKMDSMQIDKPLNDLADVCIRVDKKNFRCHKVILASRSEYFKARLSRMKDFHEGKDELYMDSLPCLEEHDMSVEAFEKMIEYMYTDRLQEINPDQAEEMFDIASRYLMFPLKRAVADVLVPHLEMASPEELCQWLMLADMYGVLKIREFCLDTIACNFELFADTKEFRAMLLTLPAPSGDSSLRTTVPSMPGSTLNNDQGNLLDDLRDKWLEIEAAELDERDDSALQFDKRLEMLMLVAEHEKSSGDVDSNCANDVPSLAFSSITPVISGEQREP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03590 478 ProSiteProfiles BTB domain profile. 219 295 IPR000210 GO:0005515
Vivi3g03590 478 ProSiteProfiles BTB domain profile. 47 114 IPR000210 GO:0005515
Vivi3g03590 478 CDD BTB_POZ_ZBTB_KLHL-like 218 309 - -
Vivi3g03590 478 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 39 442 IPR044515 -
Vivi3g03590 478 CDD BACK 330 373 - -
Vivi3g03590 478 Gene3D Potassium Channel Kv1.1; Chain A 15 159 IPR011333 -
Vivi3g03590 478 Gene3D Potassium Channel Kv1.1; Chain A 196 358 IPR011333 -
Vivi3g03590 478 SUPERFAMILY POZ domain 216 325 IPR011333 -
Vivi3g03590 478 SMART BTB_4 47 144 IPR000210 GO:0005515
Vivi3g03590 478 SMART BTB_4 219 326 IPR000210 GO:0005515
Vivi3g03590 478 SUPERFAMILY POZ domain 37 142 IPR011333 -
Vivi3g03590 478 FunFam BTB/POZ domain-containing protein 41 163 - -
Vivi3g03590 478 Pfam BTB/POZ domain 44 143 IPR000210 GO:0005515
Vivi3g03590 478 Pfam BTB/POZ domain 217 322 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03590 Vivi-Chr3 60780719 60785033 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi3g03590 BTB 6.4e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03590 K10520 - gmx:100812009 695.656