Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03546 ATGGCGACTATACTTGACTTTGAAGAAGCTATTGAGCCACCAGTTTTACCTCCATCACCTCCTGATGTGCTGCCTACTACGGAAACAGAAGAAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCCAGTGTTGGTACCACAGGAAAACACATACCTTTGATTGCAAATCTCTTCAAAGTTGCTGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGAGCTGTTGAAAGCAAGGGCTTTGGGAGAAAAGTGATTGATAAGCTTCGCCAAACATACTCTTCTGAACTTGGTGGCAAAAGCTTTGCGTATGATGGAGGAAGAGCATTGTACACGGTGGGTCCTCTTCCAGATGATAAGTTTGAGTTCAAAGTTCTACTTGAAGAAACACTTTCATTTCCAAAGTGTACCGAGAGTCCTGGTGCTAATGGAACCCCTTGTGAGGAAAATAAAAGGACAAAGCGTTCTCTTCAGCCAAAGGCATTCACAGTGGAGATAAGTTTTGCTGCCAAAATACCCTTGCAGTCCATTGCTCTTTCCCTTGAAGGGATTGAGTCATGTGCAAATTCTCAGGATGCATTGAGGGTGCTTAATATTGTACTGAGGCAGCGAGCAGCCAATAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAGGAATATAATTGATGTTGGAGGCGGAGTAACTGGTATTCGCGGTTTTCATTCAAGTTTCCGTCTTACACAAGGAGGGTTGTCTCTTAATATGGATGTGTCCACAACGATGATCGTAAAACCTGAACCTGTAATTGATTTTCTCCTAAAAAACCAGAATGTGAAGGAAACTCGTCGTATTGACTGGGCAAAGGCCAAGAGAATCCTTAAAAATTCAAGAGTTCGTGCTACACATCGTAACCAAGAATTCAAAATTGCTGGCTTTAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGACGAAGAATGGAGAAACAGAACAGACAGTGGAACTTACAGTATATGACTATTTTGTTGAACACCACGACATTGAGGCGGCCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCAATCTTTTTGCCCCTGGAGCTATGTACACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGCACAAAAGGCATCTTTAGTAGAACAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTTTAGGAAATTCTTCCTACGAAGATGACGCTGTTCTTGCGGCATGTGGCATTTCTATTGACAAACAGTTCACTCCAGTTGATGGTCGAGTTCTTGAGACACCAAAGTTGAAGGTAGGTAAGAATGAAGACTGCTTTCCCAATAATGGAAGGTGGAACTTTAAAAAAAAGACACTTCTAGAACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAATATGTGATACTAGTTATATAACGAGGGAGCTGATTAAATGTGGAATGAGCAAGGGAATGAATATTGAACGGCCATATACTTTAATAGAGGAAGATGCACAAACGAGAAAATTTAACCCTATTGCAAGGGTTGAAAAGATGTTTGACCTACTGACATCAAAACTTACTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGAAAGTGTTTGTGTGAAGCTGGGGTTGCTACACAGTGCATTTCCCCTCTCAAGATCACCGAACAATATCTTACTAATGTGCTTCTTAAAATCAATTCCAAGCTCGGAGGAATAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCAATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCATCTGTGAGATCGCAGTCACCTAAGGTGGAAATGATTGATGCTCTATTCAAGCCTTTGGATGATGGGAGTGATGATGGCATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCTAGTAATGGACGCAAGCCAACTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGGTGTTGAATATAGAGCTTAACCAGATAATAAAGGCTTATAAACATATTGGCGAGGTTGATGTTCCCAAGTTCGCTGTAATTGTGGCACAGAAAAATCATCATGCAAGGCTATTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTGCTCATGCTGGATTGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATTGGATTCACGCCAGATGGCTTGCAAAATTTGATCAATTCGCTTTCCTATGTGAACCAAAGGAGCTCGATCGCAACCTCAATTGTGGCACCTATATCCTATGCCCACCATGCTGCAGCTCAAATGGCAAAATTTCTGAATTTCGATGATTTATTGGACAGAGACATCCCCATTCCAGAGCTTCCTAGGTTGCATAAGAATGTGAAGACCTCCATGTTCTTCTGTTGA 2679 0.4128 MATILDFEEAIEPPVLPPSPPDVLPTTETEEIALPTYSIISRPSVGTTGKHIPLIANLFKVAADATDATFFQYSVTITSEDKRAVESKGFGRKVIDKLRQTYSSELGGKSFAYDGGRALYTVGPLPDDKFEFKVLLEETLSFPKCTESPGANGTPCEENKRTKRSLQPKAFTVEISFAAKIPLQSIALSLEGIESCANSQDALRVLNIVLRQRAANRGCLLVRQSFFHDDSRNIIDVGGGVTGIRGFHSSFRLTQGGLSLNMDVSTTMIVKPEPVIDFLLKNQNVKETRRIDWAKAKRILKNSRVRATHRNQEFKIAGFSEKPCIQQLFSMKTKNGETEQTVELTVYDYFVEHHDIEAASSAYLPCLDVGKPNRPIFLPLELCTLVPLQRYTKALSPAQKASLVEQSRQKPQERIKILTNALGNSSYEDDAVLAACGISIDKQFTPVDGRVLETPKLKVGKNEDCFPNNGRWNFKKKTLLEPSHIDYWAVVNFSAICDTSYITRELIKCGMSKGMNIERPYTLIEEDAQTRKFNPIARVEKMFDLLTSKLTKEPKLILCVLPERKNCDIYGPWKRKCLCEAGVATQCISPLKITEQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGQSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLDDGSDDGIIRELLLDFYSSSNGRKPTQIILFRDGVSESQFNQVLNIELNQIIKAYKHIGEVDVPKFAVIVAQKNHHARLFQANALENVPPGTVVDTKIVHPRNYDFYMCAHAGLIGTSRPVHYHVLLDEIGFTPDGLQNLINSLSYVNQRSSIATSIVAPISYAHHAAAQMAKFLNFDDLLDRDIPIPELPRLHKNVKTSMFFC 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03546 892 ProSiteProfiles Piwi domain profile. 556 864 IPR003165 GO:0003676
Vivi3g03546 892 FunFam Protein argonaute 3 624 892 - -
Vivi3g03546 892 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Vivi3g03546 892 SUPERFAMILY PAZ domain 267 427 IPR036085 GO:0005515
Vivi3g03546 892 CDD Piwi_ago-like 432 858 IPR045246 -
Vivi3g03546 892 Gene3D paz domain 266 391 - -
Vivi3g03546 892 FunFam Protein argonaute 7 267 391 - -
Vivi3g03546 892 Pfam Argonaute linker 1 domain 222 270 IPR014811 -
Vivi3g03546 892 ProSiteProfiles PAZ domain profile. 273 387 IPR003100 GO:0005515
Vivi3g03546 892 SUPERFAMILY Ribonuclease H-like 540 860 IPR012337 -
Vivi3g03546 892 Gene3D - 451 617 - -
Vivi3g03546 892 Gene3D - 623 892 IPR036397 GO:0003676
Vivi3g03546 892 Pfam PAZ domain 276 403 IPR003100 GO:0005515
Vivi3g03546 892 SMART DUF1785_2 220 272 IPR014811 -
Vivi3g03546 892 SMART PAZ_2_a_3 273 409 IPR003100 GO:0005515
Vivi3g03546 892 Pfam Argonaute linker 2 domain 413 458 IPR032472 -
Vivi3g03546 892 Pfam Piwi domain 556 863 IPR003165 GO:0003676
Vivi3g03546 892 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 41 865 - -
Vivi3g03546 892 CDD PAZ_argonaute_like 274 386 - -
Vivi3g03546 892 SMART Piwi_a_2 556 864 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03546 Vivi-Chr3 59647916 59655948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03546 42 892 Eukaryotic Initiation Factors Gene Family AT1G48410 36.233 1.25e-156 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03546 K11593 - gmx:100778875 1330.08