Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03540 ATGGAGGAAACAATGGCGGCAAGATATTGGTGTCACGCGTGTTCTCAAATAGTCAGTCCTATCATGGGAATGGAGATGAAATGTTCGGTTTGCCAGAGTGGATTTATTGAAGAAATGAGCAGTGCCACTGGTATCAATGACTTGCAAAATGTACCGGAAAATGATTTTGGATCGGATCGTTCTCCCTCCCTTTGGGCACCAATCTTGCTAGGCATGATGGGAAATCCGCGGCTTCGTCAGAGATTGAGACGGATGGAGCTTGAAGAGGATTATGATAGTGGGAATCACGATGGTGATAATGGTAATGGTGGTGTAGGACATTATGATCGAGAGCTCGAGTCTATCCTAAGAAGGAGGAGAAGAAGCTCTGCTACTATTCAGCAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAGACGCATGAGAATATTGATAGGGATGACCGTGTTAGGGAAAGAGAAAGAGAGCATGTGATCTTGATTAATCCTTTTAATCAGACTATTATTGTTCAAGGTTCCTATGATTCGAACCGGGATCAAAGTGATAATAATAACCCCATTGGGTCTTTGGGTGACTATTTCGTAGGACCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGATATGGAACTCCACCTGCACCGAAGGAAGCCGTTGAAGGTTTACCAACTGTGAAAATCAATGAGAACATGCAGTGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGACGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCCTGGCTGGAGCTGCATAGTTCTTGTCCGGTTTGCAGATCTCAATTGCGAGTGGATGATCCTAAGCAAAACTCTGATGTGTCAAGGAATAACAGAAATCAAAGGGAGAATGAAAATATTGGACATGCCAGTGCTGAAGGAGATAGTGAAGGGAGAAGTGCAAGCGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCATCATCATCATCATCATCTTCTAGTTCAAATGCAAATGGAAACAGTAGTCAACCAGAAAGAAACTGA 1080 0.4278 MEETMAARYWCHACSQIVSPIMGMEMKCSVCQSGFIEEMSSATGINDLQNVPENDFGSDRSPSLWAPILLGMMGNPRLRQRLRRMELEEDYDSGNHDGDNGNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSETHENIDRDDRVREREREHVILINPFNQTIIVQGSYDSNRDQSDNNNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEGLPTVKINENMQCSVCLDDFEVGSDAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDDPKQNSDVSRNNRNQRENENIGHASAEGDSEGRSASGGRRFSFPWPFNGLFSSSSSSSSSSNANGNSSQPERN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03540 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 283 - -
Vivi3g03540 359 MobiDBLite consensus disorder prediction 286 312 - -
Vivi3g03540 359 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Vivi3g03540 359 MobiDBLite consensus disorder prediction 286 326 - -
Vivi3g03540 359 Pfam Ring finger domain 238 280 IPR001841 -
Vivi3g03540 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 285 IPR013083 -
Vivi3g03540 359 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Vivi3g03540 359 SMART ring_2 239 279 IPR001841 -
Vivi3g03540 359 FunFam E3 ubiquitin-protein ligase RING1-like 206 286 - -
Vivi3g03540 359 SUPERFAMILY RING/U-box 231 290 - -
Vivi3g03540 359 CDD RING-H2_RNF126-like 238 280 - -
Vivi3g03540 359 MobiDBLite consensus disorder prediction 338 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03540 Vivi-Chr3 59558968 59561224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03540 136 286 C3H Transcription Factor Family AT1G26800 37.255 7.06e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03540 - K11982 aip:107625235 450.669