Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03534 ATGAGAAATCCTTCGTCATCAACCGCCAAATCAGCATCAACAAATTCAAGGAAGAACCAGAAGAATAATAGTAACAATGGGAGCAGCAGTACTACTGCCGCAACAACTCCGTGTTGCAGTAAAGTAGGGTTGAAGAGAGGACCGTGGACAGCAGAAGAAGACCAAGTGTTATCGGATTACATTAAGATAGAAGGTGAAGGTCGCTGGAGAACTCTCCCCAAACGAGCTGGCCTTCTCCGATGCGGCAAAAGCTGTCGCCTCCGTTGGATGAATTATCTTCGTCCGTCTGTTAAACGCGGCCAGATCGCACCTGATGAAGAAGATCTCATTCTCCGTCTCCACCGTCTTCTTGGGAACAGGTGGTCATTGATAGCGGGAAGAATTCCAGGAAGAACTGATAATGAGATTAAGAATTATTGGAACACACATCTCAGTAAGAAACTCATTAATCAAGGAATTGATCCCAGAACACACAAACCTCTTGATAATAATCCTTCTTCTTCATCTTCAATAATCCCAAATATTAATCACCAAACTACTCCTTTTACATCTTCCGCTTCTCCTGATCATCATCCAATTATTACTATGACTAACAATGAATCTGATCATAATCCCTCATCTGATGATCATCACTTAGCTCAATATCATAATGATAATAATCATTATCCACTCCAACAGCAACAACAACAAGCTCAGGATCAGGAGTTTAATGGTGCTAATTGTGATAGCTTAATTAGTGATGTTTCTGCAATGGATTATCATCTGCTTAACAACAACAACAACAAAGGGGATTACGATGACAGTAGTGTATGTTGTGATGATGTGTTTACTTCATTTCTTGATTCATTGATCAACGAAGATGCTTATGCTACACACCGATCAGAGAATGATCCTTTGATCTTGTCTACTGCACCACCGTCTTTGTGGGAATCGCCACTCATCAATATGTCTACTCTTATTTCCAACAAAAACCATGACGACTCACCCAAGACGGGACAGATTCATGATGCATAG 1014 0.4093 MRNPSSSTAKSASTNSRKNQKNNSNNGSSSTTAATTPCCSKVGLKRGPWTAEEDQVLSDYIKIEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLDNNPSSSSSIIPNINHQTTPFTSSASPDHHPIITMTNNESDHNPSSDDHHLAQYHNDNNHYPLQQQQQQAQDQEFNGANCDSLISDVSAMDYHLLNNNNNKGDYDDSSVCCDDVFTSFLDSLINEDAYATHRSENDPLILSTAPPSLWESPLINMSTLISNKNHDDSPKTGQIHDA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03534 337 MobiDBLite consensus disorder prediction 1 37 - -
Vivi3g03534 337 CDD SANT 48 93 IPR001005 -
Vivi3g03534 337 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Vivi3g03534 337 MobiDBLite consensus disorder prediction 160 202 - -
Vivi3g03534 337 FunFam Myb transcription factor 43 99 - -
Vivi3g03534 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Vivi3g03534 337 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Vivi3g03534 337 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 36 230 - -
Vivi3g03534 337 SMART sant 98 146 IPR001005 -
Vivi3g03534 337 SMART sant 45 95 IPR001005 -
Vivi3g03534 337 FunFam transcription repressor MYB5-like 103 170 - -
Vivi3g03534 337 Pfam Myb-like DNA-binding domain 103 144 IPR001005 -
Vivi3g03534 337 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Vivi3g03534 337 Gene3D - 102 170 - -
Vivi3g03534 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Vivi3g03534 337 CDD SANT 104 144 IPR001005 -
Vivi3g03534 337 Gene3D - 43 99 - -
Vivi3g03534 337 MobiDBLite consensus disorder prediction 153 217 - -
Vivi3g03534 337 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03534 Vivi-Chr3 59464968 59466629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03534 24 286 MYB Transcription Factor Family AT3G13540 53.030 5.28e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g03534 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03534 K09422 - pvy:116139454 295.434