Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03533 ATGAGAGGAAGAAGCTACACTCCATCGCCTCCACCCCGTTACAGCCGAAGAGGAGGCGGAGGAGGAGGTCGCAGTCCAAGTCCCCGTCGCCGGTACGCCCCCCGTGAAAGTGATCTACCCACCAGTCTTCTTGTTCGCAACCTCCGCCATGACTGTAGGCCTGAAGATCTTCGCAGACCTTTCGGTCAATTTGGTCCTCTCAAAGACATTTATCTTCCTAAAGATTATTACACTGGACAGCCCCGTGGGTTTGGGTTTATCCAATTTGTGGATCCTGCTGATGCTGCCGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAGGAGAATCGAAAGAAGCCAACTGAGATGAGGGTCCGGGAGAGAAGTGGGCGGTATTCTGATCGAAGGAGGTCTCCCCCGCGTTATTCTCGTTCACCTCGCTATTCCCGGTCTCCACCTCGTCATAGAACCCACTCTCGCAGTCGTGATTATGATTCCCCTCCTCCTAAAAGAAGGGAATATTCAAGATCGCTATCACCTGAGGATAGGAGGCAAAGTAGAGAAAGATCACACCACAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAACAATGGGGTTGCAAGAAGCCGTAGTCCGAGTCCAGAGAAAGGTCCAGTCCTGAGCAGAAGTCCAAGTCCAAACCGTGATGCCAGGGAGTCAGCCCGCAGTAGATCCCCCAGTCAGTGA 741 0.5223 MRGRSYTPSPPPRYSRRGGGGGGRSPSPRRRYAPRESDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGRYSDRRRSPPRYSRSPRYSRSPPRHRTHSRSRDYDSPPPKRREYSRSLSPEDRRQSRERSHHSRERSYSRSPPNNGVARSRSPSPEKGPVLSRSPSPNRDARESARSRSPSQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03533 246 MobiDBLite consensus disorder prediction 203 225 - -
Vivi3g03533 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Vivi3g03533 246 FunFam Serine/arginine-rich SC35-like splicing factor SCL30A 33 149 - -
Vivi3g03533 246 SMART rrm1_1 42 115 IPR000504 GO:0003723
Vivi3g03533 246 MobiDBLite consensus disorder prediction 121 246 - -
Vivi3g03533 246 MobiDBLite consensus disorder prediction 121 145 - -
Vivi3g03533 246 Gene3D - 9 132 IPR012677 -
Vivi3g03533 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Vivi3g03533 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 40 233 - -
Vivi3g03533 246 MobiDBLite consensus disorder prediction 162 202 - -
Vivi3g03533 246 MobiDBLite consensus disorder prediction 1 40 - -
Vivi3g03533 246 SUPERFAMILY RNA-binding domain, RBD 39 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03533 Vivi-Chr3 59452268 59454535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03533 41 149 Eukaryotic Initiation Factors Gene Family AT4G34110 29.730 1.16e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03533 K12900 - gmx:100775883 299.286