Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03516 ATGGGAGAAATACAAAGTGAGGTAACATGGGAGAAGAAGGAGGAGGAAGAAGAGGCAGAAGCTCAAGTTGAAATATGGAAATACATATTTGGTTTTGTAGAACTATCTGTGGTGAAATGTGCAATTCAACTTGGCATAGCTGAAGCAATTGAAAACAACAAAAAACCCATGTCACTATTAGAGTTATCATCATCACTAAAATGTGACCCTTCATATCTTAACCGTATCATGAGATTCCTAGTACATAGGAAAATATTCAAAACCATATCTACCAACCACGACAACTATCCTAGCTATGTTCAGACGCCACTTTCTCGCCGTTTGATTCGTAACGGCGAGAAAAGCATGACTGCTTTTCTTTTACTGGAAAGCAGTCCTGTTATGGTAGCTCCTTGGCTTAGTCTAAGTGACCGTATTTTAGAAAACGGAAACCCTTCTTTCAAGAAGGTTCACGGTGAAGATGTTTGGCGCTATGCTGCTTCAAATCTTGATCATAGTAATCTTATCAACGATGCTATGGCTTGTGATGCTAAAGTTGCTGTGCCTGCTATTGTTGAAGGTTGCAGTGAGTTGTTTGATGGTGTTGGATCATTAGTAGATGTTGGTGGTGGGAATGGTACCACCTTGAGCATCCTTGTTAAGGCTTTTCCTTGGATTCGAGGTATCAACTTTGATCTTCCTCATGTCATTGATGTGGCTCCAAAGTTTGATGGTGTAGAACATGTGGCAGGTGACATGTTTACAAGTGTTCCCAAAGCTGATGCTGTATTTTTTAAGTGGGTTTTGCATGATTGGGGGGATGAAGAGTGCATCCAAATCTTAAAAAATAGTAGGGAAGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTGGAAGCAGTTATAGAAGAAGAAGGAGGAGCAAAACACAACAAGTATGAAGACGTAGGGTTAATGTTAGACATGGTAATGATGGCACATACAAACATTGGCAAAGAAAGAACAGTAAAAGAATGGGAGCATGTGATCAAAATGGCTGGATTCAGTACAATCACTGTGAAATCTATCAATGCCGCACAGTCTGTAATTGTCGCCTCGTGCTAA 1083 0.3989 MGEIQSEVTWEKKEEEEEAEAQVEIWKYIFGFVELSVVKCAIQLGIAEAIENNKKPMSLLELSSSLKCDPSYLNRIMRFLVHRKIFKTISTNHDNYPSYVQTPLSRRLIRNGEKSMTAFLLLESSPVMVAPWLSLSDRILENGNPSFKKVHGEDVWRYAASNLDHSNLINDAMACDAKVAVPAIVEGCSELFDGVGSLVDVGGGNGTTLSILVKAFPWIRGINFDLPHVIDVAPKFDGVEHVAGDMFTSVPKADAVFFKWVLHDWGDEECIQILKNSREAIPKENGKVIIVEAVIEEEGGAKHNKYEDVGLMLDMVMMAHTNIGKERTVKEWEHVIKMAGFSTITVKSINAAQSVIVASC 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03516 360 SUPERFAMILY "Winged helix" DNA-binding domain 15 112 IPR036390 -
Vivi3g03516 360 Pfam Dimerisation domain 37 81 IPR012967 GO:0046983
Vivi3g03516 360 FunFam O-methyltransferase family protein 110 359 - -
Vivi3g03516 360 Pfam O-methyltransferase domain 132 342 IPR001077 GO:0008171
Vivi3g03516 360 PANTHER O-METHYLTRANSFERASE 35 341 IPR016461 GO:0008168
Vivi3g03516 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 360 IPR016461 GO:0008168
Vivi3g03516 360 Gene3D - 7 108 IPR036388 -
Vivi3g03516 360 PIRSF O-mtase 3 360 IPR016461 GO:0008168
Vivi3g03516 360 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vivi3g03516 360 CDD AdoMet_MTases 198 291 - -
Vivi3g03516 360 FunFam O-methyltransferase family protein 9 108 - -
Vivi3g03516 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 357 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03516 Vivi-Chr3 58998917 59001006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03516 38 346 Monolignol Biosynthesis Gene Families AT5G54160 38.365 4.47e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03516 K22588 - gmx:100782951 471.085