Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03510 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAAAATGCACCACTTCCAACTTCGGCTAACAATGCAACCTCTCAACCTCCTTCTCGCCCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGAGCTAACGCGCCGCCGCCGCTACCTGCTTCAGCTTCGTCGGGGAATTTTAATGCTCCGTCTGGGAATGAAAATTCCGGATCGCGTTGGGCGCCGCCGCAGAGGAACGATTACCGTGGTCGTCCTGGTGGTTTTGGGAACAGGACTGGTGGTGGTGGTTGGGATAGGCGGGAGGCTAATCCTTTTGCAGATCAGGATGATTCTGAGGAGCCTGTTACTCAAGAGGAGCAGGAGAATACCGGGATAAATTTTGATGCTTATGAGGATATTCCGGTGGAGACTAGCGGTGGTAATGTTCCTCCGCCGGTGAATACTTTTGCTGAGATTGACTTGGGGGATGCGCTTAATGAGAATATAAGACGGTGCAAATATGTGAGGCCTACGCCGGTTCAGCGGCATGCAATACCGATATCTCTTGCGGGAAGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCGGCTTTTTGTTTTCCAATTATCAGTGGAATTATGACCGGACAACCTGCGCAGAGGCCGCCTCGTGGGGTGCGGACTGTGTGTCCACTTGCCCTTGTTCTCTCTCCAACTAGAGAGCTATCGATGCAGATTCACGAAGAGGCTAGGAAATTTTCGTACCAGACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTGGACATTCTTGTCGCGACTCCTGGAAGGTTGGTAGATTTGTTGGAAAGAGCTAGAGTTTCACTGTCGATGATTAGGTATCTTGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAGATTGTGGAACAAATGGACATGCCTCCAGCAGGGGCGAGACAGACTATGCTGTTCAGTGCCACTTTTCCAAAAGAGATACAGAGACTAGCCTCCGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGGGTGGGATCAAGTACCGATTTAATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTCGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGTGTCTTAATAATTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATATGCATTAAAGTCTTTTAAAAGTGGCAAGACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCACGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTACACCGTATTGGAAGGACAGGGAGAGCAGGAAAGAAAGGTCTTGCTACTGCATTCTTTAACGAAAACAATACATCTCTCGCAAGGTCTCTAGGAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTTTCGCGGTTTGCTGCACGATCATCCTATGGCGGAGGAAAGAATCGTCGATCAGGAGGCCGATTTGGTGGTCGTGACTTTCGAAGAGAAGGTTCATTTAGTAGGGGTGGTTCTGATTACCATGGTGCAGGAAATAGCAGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGTGGATATGGTGGCGGGTATGCAGGAAATAGCGCGGGTCCTGGGGTGACCAGTGCATGGGACTGA 1848 0.4865 MRSSWADLAANSAAENAPLPTSANNATSQPPSRPVYVPPHLRNRGANAPPPLPASASSGNFNAPSGNENSGSRWAPPQRNDYRGRPGGFGNRTGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNENIRRCKYVRPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREYALKSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSLARSLGDLMQEANQEVPAWLSRFAARSSYGGGKNRRSGGRFGGRDFRREGSFSRGGSDYHGAGNSSGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03510 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 542 IPR001650 -
Vivi3g03510 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 364 IPR014001 -
Vivi3g03510 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 542 - -
Vivi3g03510 615 Pfam DEAD/DEAH box helicase 172 353 IPR011545 GO:0003676|GO:0005524
Vivi3g03510 615 MobiDBLite consensus disorder prediction 556 572 - -
Vivi3g03510 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 518 IPR027417 -
Vivi3g03510 615 MobiDBLite consensus disorder prediction 1 125 - -
Vivi3g03510 615 SMART ultradead3 167 379 IPR014001 -
Vivi3g03510 615 MobiDBLite consensus disorder prediction 53 76 - -
Vivi3g03510 615 CDD DEADc_DDX3_DDX4 149 370 IPR044763 GO:0003724|GO:0005524
Vivi3g03510 615 SMART helicmild6 422 503 IPR001650 -
Vivi3g03510 615 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g03510 615 FunFam ATP-dependent RNA helicase RhlB 367 546 - -
Vivi3g03510 615 CDD SF2_C_DEAD 376 512 - -
Vivi3g03510 615 MobiDBLite consensus disorder prediction 545 585 - -
Vivi3g03510 615 Gene3D - 103 366 IPR027417 -
Vivi3g03510 615 Pfam Helicase conserved C-terminal domain 388 503 IPR001650 -
Vivi3g03510 615 Gene3D - 367 547 IPR027417 -
Vivi3g03510 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Vivi3g03510 615 FunFam Probable ATP-dependent RNA helicase DDX4 109 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03510 Vivi-Chr3 58857826 58863757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03510 137 535 Eukaryotic Initiation Factors Gene Family AT3G19760 31.750 9.64e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03510 K11594 - gmx:100795756 935.25