Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03502 ATGAGAGAGAGAGAGATAGAGAGATGGACCTTGGTGAGCTCTAGAAAAATGAGAGGGACCAGACGGGATCAAAACAAGACAGATAGGATTAACCTGCATAACACAGAAAGTGATGGAACAACAACTTGCTACATTAACAACCTTCCAAAGGATATCACTGAGAGAGAAATCAAGAGAATGTTTGAACGATGGGGCAAGGTGGTGGATGTTTACATAGCCAGAAAAAGAAATAAGCTGGGAAAGATATTTGGGTTTGTCAGATATGTGGATATCAAAGATGACAAATGGCTAGAGGATCAACTCAAAGATGTATGGTTCGGCTCATACAAGGTATGGGCGAATATCTCAAGATTCCAGAGAAAAAACAGTAGGCTGGTACAATGGCGTCGTAGCTCTAAAGAGGAGTATCGTACTCTAGTAAGAAAGGATGGGTGGGTCAGGGAGAAACAAAACACTCAGAATGTTGGAGTCTGGCATAACATGAGAAAGAATGGAAAAACGTACGCAGATGCAACACGGAACAAAGAGTCCACTTTCAGGGAAAAACATCATGGAAACGTAACCAAGGAGGGCACAAGTCTATTCATTTCTATAAAAGAAGAAGAAATGACATGGGCTAAATCAGGTTTCACTGGTTTTGTCAGGAAGGTGGAAGATTTAAGCTCGTTACAACAAAGGTTCGAGAATGAAGGAATTGCAACGATTAAGGCTATCCCAATGGGTGGAGAACGAGTCTTCATTAAAGTGGATGAGGATGAAGACTTCAAGAGCTTAGTAAAGGAGTATGAAGGCTTTTTCCAACAAGAATTCAGCATCATCAGAGAATGGAATCCTAGAGACATCGGGGGAGCGAGATACGTCTGGGTTCGTGCATGGGGAATCCCTATCCATGCCTGGAACAAGAAAGTCTTTTCCTTGTTAACAACCTCTTTTGGCAAGCTTATGAAACTCGATCAGGCAACTATAGATAGGGAGAGGTTTGATTTGGCCAGATTATACGTTAGAACGACAATGATGGAGTTCATCAACAAGGTGATCAAAGTCCAAATTAATGACGAGATCTTCGCTATTAGAATTACAGAAGAATTGTGTGATTGTGAGTCTGGAGATTACATGATGGACATTGAAAATTATCTTTCCGATGCAGAAGTTGAAGATGATGATACCTCTGTAAACTCTATGGATACTTGCATTCCTCCATCAATGTCTTCTGAGGAAGATGAAGAGACAATGAAGAAGATAGAAGATAATGCTGAGCATTTAATTCTTGAAGCGGCAGCGGCTGAAGCATTAAATGGGGGAATACACGCGGTAGACAATACGGAGAACGAGAAAAATGAAGGGCCAAATCCCCCGGAATTAACGCAAATATTAAATGAAACGTGTAGAATTTTCAATGCATGCGGTGATTTGTCAGGAATAAAATTAAAGACGAAGGAAACAGTTGGGGGCATCGTGTCATGTTCAAATGATAAAAATAGTGGTGATTTAATAAGGTGGGGCCCATCTATTGAAAGAGAAAAAAATGGGCCATTACATGAACCAAGCCCAATTCAAAGCTCTGGTGAAATACAAGTCACAGACAAAATTGATAATTATAGTAATTCAGGGGGTACTCAAATTAAAACCAAAGCACCGAAAGAGAACCCAAATCAGGCGTGTCAAGAAGATAAGGGAAATCAAAATAGGCTAGAACAACCCAGGCACGATCCACTTCAATCCCTAAACTCTAAAGCTTCCATGGAGATTATAAAAAATTATGGCAACCTCGGTGACGATGATGAAAATAAAGAAAGCGATAGGGTCGACATCGGAAAAAAGGCCTCATCAAGGCAAGAAGGTAAGAGTCCAGACAACGTATCTCAAGGGACATCAATCTCTTCAAAAGTCAGAAGAAAGAGGAGGATAGAAATATTAAGGGAGAAGAAGAAATTAAAGAAAAAGGGGAAAAAGGTATCAACAAATTGTTCATGCAGCCAACGCTCCAGACTCCACAAGGTACAGGCTAATCATAACTCTGTTCTTACAGAAAACGAATCGGATAGAAAAATGTGGGTGTTGTTACATGGCGATGCTAAAGAAGTTGCGAAAGATGTATGGGATCTAGGAAAAGATTATGGATTATTGCACAAAGGGGAGGAAGGAGAAATAATTCAAGAACTGGTGTCAGGAGTGAAGATCGGAGAAGGATCTTCCAAATAA 2202 0.4037 MREREIERWTLVSSRKMRGTRRDQNKTDRINLHNTESDGTTTCYINNLPKDITEREIKRMFERWGKVVDVYIARKRNKLGKIFGFVRYVDIKDDKWLEDQLKDVWFGSYKVWANISRFQRKNSRLVQWRRSSKEEYRTLVRKDGWVREKQNTQNVGVWHNMRKNGKTYADATRNKESTFREKHHGNVTKEGTSLFISIKEEEMTWAKSGFTGFVRKVEDLSSLQQRFENEGIATIKAIPMGGERVFIKVDEDEDFKSLVKEYEGFFQQEFSIIREWNPRDIGGARYVWVRAWGIPIHAWNKKVFSLLTTSFGKLMKLDQATIDRERFDLARLYVRTTMMEFINKVIKVQINDEIFAIRITEELCDCESGDYMMDIENYLSDAEVEDDDTSVNSMDTCIPPSMSSEEDEETMKKIEDNAEHLILEAAAAEALNGGIHAVDNTENEKNEGPNPPELTQILNETCRIFNACGDLSGIKLKTKETVGGIVSCSNDKNSGDLIRWGPSIEREKNGPLHEPSPIQSSGEIQVTDKIDNYSNSGGTQIKTKAPKENPNQACQEDKGNQNRLEQPRHDPLQSLNSKASMEIIKNYGNLGDDDENKESDRVDIGKKASSRQEGKSPDNVSQGTSISSKVRRKRRIEILREKKKLKKKGKKVSTNCSCSQRSRLHKVQANHNSVLTENESDRKMWVLLHGDAKEVAKDVWDLGKDYGLLHKGEEGEIIQELVSGVKIGEGSSK 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03502 733 Pfam Domain of unknown function (DUF4283) 210 334 IPR025558 -
Vivi3g03502 733 Coils Coil 404 431 - -
Vivi3g03502 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 118 IPR000504 GO:0003723
Vivi3g03502 733 CDD RRM_SF 44 111 - -
Vivi3g03502 733 SMART rrm1_1 42 114 IPR000504 GO:0003723
Vivi3g03502 733 MobiDBLite consensus disorder prediction 496 634 - -
Vivi3g03502 733 MobiDBLite consensus disorder prediction 588 613 - -
Vivi3g03502 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 92 IPR000504 GO:0003723
Vivi3g03502 733 SUPERFAMILY RNA-binding domain, RBD 34 125 IPR035979 GO:0003676
Vivi3g03502 733 MobiDBLite consensus disorder prediction 514 583 - -
Vivi3g03502 733 Gene3D - 12 157 IPR012677 -
Vivi3g03502 733 PANTHER DUF4283 DOMAIN PROTEIN 173 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03502 Vivi-Chr3 58695093 58704711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03502 41 135 Eukaryotic Initiation Factors Gene Family AT1G71770 26.316 3.00e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03502 - - vvo:131661586 1419.83