Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03486 ATGTATTGTTGTTACAGAATAACGATCCAACCAAATGTAACACCAATTTCCGTCACATATTCTGGAATTAGATCCAACTCCGGAAAATTTCAAATCCGAAACTATGGTTCTAATTCATTACTCAAAATAAAAGCTTCAATTAAAAACAACAATAATTGTGCTTCGTTCAAATCTGAATTAACCTTGTATGAGGTTTTAGGTATATCCAAATCCGTGTCTATAGCGGAATTGAAGCGCGCTTATAAGCAAAAGGCCCGAAAATGTCACCCAGATTTGTCACCACCGGGTCAGGACAAAGAGTACACAAAGATGTTTATTATCGTGCGTGAGGCTTATGAGATTTTGTCCGATCCAGTAACAAAAGCTATTTATGATAGAGATTTGGCTAAAGGGATTCCGTTTGAATTTTCTACTAGTAGACACTACTGTCATCGCTCTCATTATGATCAGGTGAGTGAAGAAAAGAAAAAATGGAAAAATGGGTGGGAATCTCAACTGGCGGAGCTGGAAAAGAAGAGTGATGGCAAGGAAGATAAAGAAAATATGACTTGGGGTGCTCGAATGCGTCAACGTAGTACTTATTAG 585 0.3778 MYCCYRITIQPNVTPISVTYSGIRSNSGKFQIRNYGSNSLLKIKASIKNNNNCASFKSELTLYEVLGISKSVSIAELKRAYKQKARKCHPDLSPPGQDKEYTKMFIIVREAYEILSDPVTKAIYDRDLAKGIPFEFSTSRHYCHRSHYDQVSEEKKKWKNGWESQLAELEKKSDGKEDKENMTWGARMRQRSTY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03486 194 Pfam DnaJ domain 62 125 IPR001623 -
Vivi3g03486 194 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 44 192 - -
Vivi3g03486 194 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Vivi3g03486 194 Gene3D DnaJ domain 45 141 IPR036869 -
Vivi3g03486 194 SMART dnaj_3 60 120 IPR001623 -
Vivi3g03486 194 MobiDBLite consensus disorder prediction 169 194 - -
Vivi3g03486 194 CDD DnaJ 61 117 IPR001623 -
Vivi3g03486 194 Coils Coil 159 179 - -
Vivi3g03486 194 SUPERFAMILY Chaperone J-domain 58 143 IPR036869 -
Vivi3g03486 194 MobiDBLite consensus disorder prediction 169 185 - -
Vivi3g03486 194 PRINTS DnaJ domain signature 190 194 IPR001623 -
Vivi3g03486 194 PRINTS DnaJ domain signature 100 120 IPR001623 -
Vivi3g03486 194 PRINTS DnaJ domain signature 81 96 IPR001623 -
Vivi3g03486 194 PRINTS DnaJ domain signature 63 81 IPR001623 -
Vivi3g03486 194 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03486 Vivi-Chr3 58505123 58506040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03486 63 125 C2H2 Transcription Factor Family AT1G74250 43.939 6.82e-08 50.1