Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03473 ATGGCTTTCTGCAACAAGCTTGGAAACCTCTTGAGACAGGGTGCTACTCAGAGCAGCCATGCTCCTGTTTCATCCATGCTTAACTATCTTCGTCACATGTCTTCAAGCAAGCTCTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTCAAAGCTATGGGGAGGTCATCGAGGCAAGAGTTATCACCGATAGAGACACTGGAAGATCGAGGGGATTTGGATTTGTTAACTTCACCAGTGATGAGTCTGCAACTTCAGCACTCTCTGCTATGGACGGGCAGGATTTGAACGGCAGAAACATTCGTGTGTCCTATGCTAATGACAGACCTTCTGCACCTCGTGGTGGCGGCGGTGGTTATGGCGGCGGCTATGGGGACGGTGGTTTTTCAAACCGTGGTGGCGGTGGAGGAGGTGGCGGTTGGTGA 444 0.5045 MAFCNKLGNLLRQGATQSSHAPVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFQSYGEVIEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSYANDRPSAPRGGGGGYGGGYGDGGFSNRGGGGGGGGW 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03473 147 Gene3D - 15 146 IPR012677 -
Vivi3g03473 147 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 144 - -
Vivi3g03473 147 FunFam Glycine-rich RNA-binding protein 2 25 147 - -
Vivi3g03473 147 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vivi3g03473 147 SUPERFAMILY RNA-binding domain, RBD 28 146 IPR035979 GO:0003676
Vivi3g03473 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Vivi3g03473 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Vivi3g03473 147 CDD RRM2_NsCP33_like 37 112 - -
Vivi3g03473 147 Coils Coil 147 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03473 Vivi-Chr3 58350664 58352529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03473 36 124 Eukaryotic Initiation Factors Gene Family AT4G34110 40.449 4.31e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03473 - - gmx:100499841 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03473 3 58350664 58352529 Vivi3g03473 3 58350664 58352529 ECH