Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03447 ATGGGTGTTGGAGGACAAGATGTAATATGTGTCAAACAAAAACATTCTTCGAAGGTTCCTCCGGGTGATCTCAGAAGACATTTAGACGATTTAGGCGATTTTTTATTTTCAGATTTAAGGAGTCCTTCTCTACTCGACAGGAAGACGACAATAGAAGACAAACAAAAAGTCCCAGAAGTTTTTAACCGTGTGATGCAATCAAGCACGACGCAGTTTACAAGTATTTCAGAAACATCAAGCAAAGATGGCCTCACTATTATTTGCTCAAAAAGAGGAGGAGATGTGTTTAAGCACAATCATTCAAGTTGGCTCCAAACAATGGCTTCTAGTCCTGAAGCAATCCATTTCAAGTTTGTTCCTATTTCATCGCTTCTCACCGGAATTCCTGGAAGCGGCTATCTTAGTCATGCAATCAATTTGTATTTAAGATATAAGCCCTCTACGGAAGACTTACAATATTTCTTGGAGTTTCAAATTCCCAGAGAATGGGCACCGATGTTTTCTGAGCTTCCTCTGAGGCATCAAAGGAAAAAACCTCATTCTCCTCCACTGCAATTTAGTTTCATGTCTCCAAAACTTCATATCAACTCTACACAGGTAGTAAGTGAACAAAAACCCGTGGTTGGCCTCCGATTATACTTGGAGGGAAGGAAATGTGATAAACTTGCAATACATATACATCATCTCTCAAGCCTTCCAAATACAATGGAACTCTCTTCAACTACTACTAGTACACCTATGTGGCGAGGATCCGACAATGATGAATCGAGTAACCAATTCGCGGAACCAATAAGATGCAAGAGATTCGCGCACGTCTGCACTTCAGTGGTTAAGTATGACCCTGACTGGTTGCACGAATCAAATTCAACCGGTGTTTATATCGTGACCGGTGCTCAACTCATTAGCAAAGGGAATTGGCCAAAGAATATGCTTCATTTGCGCCTTCTCTACACTCACATACCGAATTGCAGCATCAGGAAAACCGAATGGGCTTCTGCGCCAGAAGCTTCGAGAAAATCGTCTTTCTTCACAAATCTGAGCACAACATTTTCATTCACACAACAAAGTGTTACTGCCACACAGAAACAGGCTGCTCCAACTGCACTTAACTCTGGTGTTTATCCGGATGGTCCGCCCGTGCCTGTTCGTTCTGCTAAAATGCTTAAATATGTGGAGACGAGCGAGGTTTTGCGCGGTCCACATGATGCTCCCGGGCATTGGTTGGTAATTGCTGCTAAGCTTGTGACTGAAGGTGGCAAAATTGGATTACAGCCAGTTCTTCCTGATGAAAGAGAGAGGATTGAAGCAGCTGGTGGAAAAGTGATTAATTGGAATGGAAGTCGCGTTCTAGGAATTCTTGCTACTTCTAGATCCATAGGGGATCATTGCATGAAGCCATTTGTGATATCTCAACCAGAGATCAACGTGCATGGAAGAACAAAATCAGATGAGTTTGTTGTGGTGGCAAGTGACGGTCTTTGGGATGTTGTATCAAACAGTTTTGTTTGTGAAGTGGTAAAAAGCTGTCTCCAAGGTCATATGAGGAGGAATCATAGTGATGCTGCTGCAATTCTAGCTGAATTGGCTATGGCTAAGGGAAGCAAAGACAACATCAGTGTTATAGTCATCCAACTCAACAACACTAACATTTGA 1653 0.4235 MGVGGQDVICVKQKHSSKVPPGDLRRHLDDLGDFLFSDLRSPSLLDRKTTIEDKQKVPEVFNRVMQSSTTQFTSISETSSKDGLTIICSKRGGDVFKHNHSSWLQTMASSPEAIHFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSTEDLQYFLEFQIPREWAPMFSELPLRHQRKKPHSPPLQFSFMSPKLHINSTQVVSEQKPVVGLRLYLEGRKCDKLAIHIHHLSSLPNTMELSSTTTSTPMWRGSDNDESSNQFAEPIRCKRFAHVCTSVVKYDPDWLHESNSTGVYIVTGAQLISKGNWPKNMLHLRLLYTHIPNCSIRKTEWASAPEASRKSSFFTNLSTTFSFTQQSVTATQKQAAPTALNSGVYPDGPPVPVRSAKMLKYVETSEVLRGPHDAPGHWLVIAAKLVTEGGKIGLQPVLPDERERIEAAGGKVINWNGSRVLGILATSRSIGDHCMKPFVISQPEINVHGRTKSDEFVVVASDGLWDVVSNSFVCEVVKSCLQGHMRRNHSDAAAILAELAMAKGSKDNISVIVIQLNNTNI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03447 550 Gene3D - 422 549 IPR036457 -
Vivi3g03447 550 ProSiteProfiles PPM-type phosphatase domain profile. 405 545 IPR001932 -
Vivi3g03447 550 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 2 424 IPR044663 GO:0006952|GO:0012501|GO:2000031
Vivi3g03447 550 SUPERFAMILY PP2C-like 424 547 IPR036457 -
Vivi3g03447 550 CDD PP2Cc 425 545 IPR001932 -
Vivi3g03447 550 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 155 IPR020864 -
Vivi3g03447 550 Pfam MAC/Perforin domain 58 141 IPR020864 -
Vivi3g03447 550 Pfam Protein phosphatase 2C 425 538 IPR001932 -
Vivi3g03447 550 SMART PP2C_4 217 543 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03447 Vivi-Chr3 57756862 57761023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03447 424 545 PP2C-type Phosphatase Gene Family AT2G29380 46.617 4.26e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03447 - - vvo:131655839 1067.37