Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03431 ATGGTGGCCTATGCAAATAGCCACACCTTTAGCATTGTCCCTCGTGTTGTTCGGGAGAGTCGGAAAGAGAAAGAATTGTTGTATAGTTTGGAGAATAAGGGTGTGATCAAGCGTAATGAGCCTCATCTTTGTCGTGTTTGTGGGAGAAAATTTTATACGAATGAAAAGCTTGTTAACCATTTCAAGCAGCTGCATGAGCGTGAGCACGCAAAAAGGGTGAATCAGATAGAGTCGGCTAGAGGGAGTAGGAAAGTGAAATTGGTGGGGAAGTATTCTATGAAAATGGACAAGTATAAGAAAGCTGCAAGGACTGTTCTTACTCCGAAAGTTGGGTATGGTTTGGCTGATGAGCTTAAACGAGCGGGGTTTTGGGTTCAAACTGTGTTGGATAGGCCGCAAGCTGCAGATGTTGCGCTGCAAAAGCATATGGTGGATATGATGGATCATAGGCGGGTCGAGTGCGTGGTCCTTGTATCAGATGATTCAGATTTTGTTGATGTAATAAAGGAAGCAAAGTTGCGATGTCTCAAGACTGTTGTTATTGGGGATTATAGTAGTGACGGAGTCTTGAAAAGAACGGCTGATACTGCGTTTTCTTGGGAGGAAATTTTGATGGGGAAGGCTAAGAAGGAGGCTATATCGGTTGTGGAAAATTGGAAAGATCGTGATGTATTGAAAAGGTTGGAGTGGACATATAACCTGGATGTCGATAAAAAGAAACTTAACCTGGATGATACAGTTTCTGAAGCATCCGGGGATGATGATATTGAAGATATCTGTAATGAAATTGATAATGACTATAAGGATGACAGAGGTTCTTGGTGGAAATTAGACTCTGACGATAATGATGTTACAAATGGATAA 864 0.4178 MVAYANSHTFSIVPRVVRESRKEKELLYSLENKGVIKRNEPHLCRVCGRKFYTNEKLVNHFKQLHEREHAKRVNQIESARGSRKVKLVGKYSMKMDKYKKAARTVLTPKVGYGLADELKRAGFWVQTVLDRPQAADVALQKHMVDMMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDYSSDGVLKRTADTAFSWEEILMGKAKKEAISVVENWKDRDVLKRLEWTYNLDVDKKKLNLDDTVSEASGDDDIEDICNEIDNDYKDDRGSWWKLDSDDNDVTNG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03431 287 Gene3D - 42 205 - -
Vivi3g03431 287 CDD PIN_LabA-like 52 183 - -
Vivi3g03431 287 ProSitePatterns Zinc finger C2H2 type domain signature. 44 65 IPR013087 -
Vivi3g03431 287 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 1 285 - -
Vivi3g03431 287 Pfam NYN domain 114 197 IPR021139 GO:0004540
Vivi3g03431 287 MobiDBLite consensus disorder prediction 264 278 - -
Vivi3g03431 287 MobiDBLite consensus disorder prediction 264 287 - -
Vivi3g03431 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03431 Vivi-Chr3 57637756 57640501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03431 1 282 C2H2 Transcription Factor Family AT4G12240 60.071 1.55e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g03431 NYN 1.5e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03431 - - tpra:123908087 474.937