Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03423 ATGGTTTCAATCCTCAAATTCCGTAGAGCCAATTCATATGGTGCTTTGAGACACTGTCATTTTGAGGGGCGTAGTAGGACTTTGGGTGGAAATGAGAAACTATGTAGGGTAGGGCTTTTCTGGGATTTGGATAACAAACCACCCAATTCAATTCCACCTTATGAAGTTGCCAATAAGCTCAGAATTGCTGCAGCTTCCTTCGGTGTTGTTCGCCATATGGTGGCTTATGCAAATAGCCACACTTTTAGCATTGTCCCTCGTGTTGTTCGGGAGAGTCGGAAAGAGAAAGAATTGTTGTATAGTCTGGAGAATAAGGGTGTGATCAAGCGTAATGAGCCTCATCTCTGTCGTGTTTGCGGGAGAAAATTTTATACGAATGAAAAGCTTGTTAACCATTTCAAGCAGCTGCATGAGCGTGAGCACGCAAAAAGGGTGAATCAGATAGAGTCGGCTAGAGGGAGTAGGAAAGTGAAATTGGTGGGGAAGTATTCTATGAAAATGGACAAGTATAAGAAAGCTGCGAGGACTGTTCTTACTCCGAAAGTTGGGTATGGTTTGGCTGATGAGCTGAAACGGGCGGGGTTTTGGGTTCAAACTGTGTTGGATAGGCCACAAGCTGCAGATGTTGCGCTGCAAAAGCATATGGTGGATATGATGGATCATAGGTGGGTCGAGTGTGTGGTCCTTGTATCAGATGATTCTGATTTTGTGGATGTAATAAAGGAAGCAAAGTTGCGATGTCTCAAGACTGTTGTTATTGGGGATTTTAGTAGTGACGGAGTCTTGAAAAGAACGGCTGATACTGCGTTTTCTTGGGAGGAAATTTTGATGGGGAAGGCTAAGAAGGAGGCTGTATCGGTTGTGGAAAATTGGAAAGATCGTGATGTATTGAAAAGGTTGGAGTGGACATATAACCCGGATGTCGATAAAAAGAAACTTAACCTGGATGATACAGTTTCTGAAGCATCCGGGGATGATGATATTGAAGATATCTGTAATGAAATTGATAATGACTATAACGATGACAGAGGTTCTTGGTGGAAATTAGACTCCGACGATAATGATGTTACAAATGGATAA 1080 0.4259 MVSILKFRRANSYGALRHCHFEGRSRTLGGNEKLCRVGLFWDLDNKPPNSIPPYEVANKLRIAAASFGVVRHMVAYANSHTFSIVPRVVRESRKEKELLYSLENKGVIKRNEPHLCRVCGRKFYTNEKLVNHFKQLHEREHAKRVNQIESARGSRKVKLVGKYSMKMDKYKKAARTVLTPKVGYGLADELKRAGFWVQTVLDRPQAADVALQKHMVDMMDHRWVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDFSSDGVLKRTADTAFSWEEILMGKAKKEAVSVVENWKDRDVLKRLEWTYNPDVDKKKLNLDDTVSEASGDDDIEDICNEIDNDYNDDRGSWWKLDSDDNDVTNG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03423 359 Pfam NYN domain 187 269 IPR021139 GO:0004540
Vivi3g03423 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 142 IPR013087 -
Vivi3g03423 359 CDD PIN_LabA-like 124 255 - -
Vivi3g03423 359 ProSitePatterns Zinc finger C2H2 type domain signature. 116 137 IPR013087 -
Vivi3g03423 359 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 35 357 - -
Vivi3g03423 359 Gene3D - 30 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03423 Vivi-Chr3 57441488 57443749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03423 21 354 C2H2 Transcription Factor Family AT4G12240 59.403 1.90e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g03423 NYN 3.9e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03423 - - tpra:123908087 570.081