Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03408 ATGGGGAGAGGAAGAGTGGAACTGAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCAAAACGAAGAAATGGTCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTGAAAACTCTTGAAAGGTATCAGAAATGCAACTATGGAGCACCTGAGGGTAATGTGACATCAAAGGAGGCTTTGGTATTGGAATTAAGCAGTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAGTCTCTACAACGCTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACTCTTGAAAGGCAGCTAGATTCTTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTGGGAGATCTTCAACGTAAGGAACACTTGCTATGTGAGGCTAACAGAGCTCTCAGACAAAGGATGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGGTGAAGATATGGGATATGGACATCATCATGATCATCATCAAGGTCATACACAGGGTGATGAACTATTTCAAGTTCAACCAATTGAGTGTGAACCAACTTTACAAATTGGATATCATCAGGGTGATCCAGGATCAGTGGTGACAGCAGGGCCAAGCATGAATAACTATATGGGTGGATGGTTACCATGA 753 0.4197 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSGEDMGYGHHHDHHQGHTQGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03408 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vivi3g03408 250 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g03408 250 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g03408 250 Coils Coil 128 148 - -
Vivi3g03408 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Vivi3g03408 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vivi3g03408 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g03408 250 FunFam MADS-box transcription factor 7 13 100 - -
Vivi3g03408 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03408 Vivi-Chr3 57262962 57266926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03408 1 250 MADS-box Gene Family AT1G24260 71.713 2.83e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi3g03408 K-box 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03408 - - gmx:547686 403.29