Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03404 ATGACGATGCTACCTGGTTTGCAATACAATATCGATGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAGCCTATAGAAGTGTTTTACATTTTGCAGAATCACGAATTGCGTGGGTTCACTGATGTTCCTGTTAACCAGCCACGCGATGGATCGGTGTATCTGTTTAATAAAAGAGTCATGCGTTTCTTTCGAAAGGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTGGCTGAAGGACATGAAAAGCTTAAGGTTGGAAATGTTGAAGCTCTAAACTGTTACTATGCACATGGAGCAGAGAACCCTAATTTCCGGAGGCGAAGTTATTGGATGTTGAACCCGGAATATGAACATGTTGTTTTTGTGCATTACAGAGAAACAAATGAGGGGACATCCCATTCTAGTCCTGTCACACAATTGTCAGCATTTAGCCAGACTCATAGCTCATATACTACTCCAAACCCTGAGACAACATCAATAGCAGGTGATTCATGGGAACCCAATCAGAATTTCTCCATCCCTCCTGGGTATTTAGAAGTTACTTCTGGTATCATGAATAATGGAATGGATCACTTGGAGAAAACAGATGCACATGCATTCCGCCAGTTGGAGGAACAGTTAAGTTTGAAGGAGAAAACAGATGCACAAACTTTGCGCCAGTTGGAGGAACAGTTAAGTTTGAACGAGGACAGCTTCAAAGAAACTTGTCCCTTTTATAGTGAGCATGAAATACCACATGAAATTTCTGTTGCATTCTCTGGACCAGATGATCATAAACAACCATACGAGGGATATAATGGAGCAAAAGATAGAAGTGGTAATCATTATCAAGAATTGCTTGACCATGATTGCCCTGGTGGGCAAGAACAAACCTTATCTTGGACAGAGATGCTGGAAACACGCAAGTTCTCATCAGGGAGGAAGTTACCAGAACAACATACTTTCGAGGCATCTGAAAATGAAAAGTCACTATCTTCCTCAGGAAGAGAAATGATCGCCAACCAGGAAACCAATTACCGGCTAAACCCCAACAGTAATAACAATGAGAACTCTGTCTTTGCATTTACTCAAGATGTTGGCGGAGTAAATTTTTTTCCATATTCTTCAGTCGAAACTCAAGGAACTACTTATGACTACTATGAAAGACTGGTTGACCAAAGCCTAATTCAGGAACCTCGGGATGCATATGCATGCTTGACTGTTGGACAGAAACAAAAATTTAAAATTACAGCTGTCTCCCCAGAATATTGTTATGCCGCTGAGGCAACTAAGGTGATCATTATTGGATCCTTTCTCTGCCCTTCCTCAGATTCTACATGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAAATGATTCAGGATGGCGTAATGTGTTGTGAGGCGCCATCCAATCTTCTTGGAAAGGTTACTCTATGCATTACTTCCGGAAATAAGGAACCATGTAGTGAAATCAAAGAGTTTGAGTTTCGTAGTAAGACCAATAGTTGCACTCATTGTAATATTTTGGAAACAGAAGCCGCCAGAAGTCCAGAAGAGCTGTTATTACTTGTTCAATTTGCAGAAATGCTCCTTTCTGCTTCTACTACGAAGGATGACAGCACAGAATCTGGAAGTCATGTTTCAACGGATCAGAAAGTAGATGATGATTCATGGAGCCATATTAGAGATGCCATCCTAGTTGGCAATGGAACTTCATCCGGTACTATTGATTGGCTTCTTCAAGAGCTGCTGAAGGATAAACTGCAGCACTGGCTTTCTTGCAGATCCAATGAACGAGATGAAAGGGAAGGCTGTTCTTTGTCCTGCAAAGAGCAAGGGATTATACACATGGTTTCTGGATTGGGTTTCGAGTGGGCCCTAAACCCCATTCTCAGTTATGGCGTGGTTGTTAATTTCCGTGACATCAACGGTTGGACTGCCCTTCATTGGGCTGCACGATTTGGAAGGGAAAAAATGGCTGCTTCGCTTATCGCTGCCGGCGCATCTGCTGGAGCAGTGACAGATCCAACTTCACAAAATCCAAATGGTTTAACTGCTGCATCTATTGCTACCAGCAATGACCACAAGGGACTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGTCATTTGTCGTCCCTCACATTGGAAAAGTGTGAAGTTTCTAAAGATTCTTCTGAGCTTGAAGCTGAGTTAACTGTCAGCAATGTGTCTAATAAATATCTTGAATCCAGTGATGACGAGGTTTCACTAAAAAAAACCTTGGGTGCTGTTAGAAATGCAGCTCAGGCAGCTGCATTGATACAGGCTGCTTTTCGCGCACATTCTTTCAGAAAACAGAAAGAGAGAGAAAGTGCACGTGATTACAGAATTGCAACTCAGGCAGCTGCACGGATACAGACTGCTTTTCGTGCACATTCTTTCAGAAAACGTAGAGAGGGAGAATGTGCACGTGATTACAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTCGGAAAGGTCGCAGAGAGTTCTTAGTTATGCGCCATAAAGTTGTTAAGATACAGGCTCATGTGCGGGGCTACCGGGCTCGGAAGCAATACAAGGTAATGATATGGGCAGTTGGAATCTTTGACAAGATTGTGCTAAGGTGGCGGAGAAAACAAGTTGGTTTGCGAAGATCTCCAGAGGAAATAGATTCGAAAGAAGAAAGCGATGATGAAGATTTTCTAAAGGTGTTCAGGCAAGTGAAAGTACATGAATCAATTAAAAAGGCTTTGGCGCGGGTGCATTCTATGGTCCCATCTGCTCGCGCTCGTCAGCAATATAATCGCTTGCTTCAGATGCATGATCAAGTCAAGGCTGATCATGGCAATAGGCATGATGAAACTCTGTCATTGACTTCTGTAGAGGGTCCTTGGATTATTGAAGATCATGACTTATATCAATTTCCTTTGGAAACTCAGTTATCAACTTCTATAGAGGGCCCATGGATTATAGAAGATGATGATTTATATCAATTTCCTTGGGAAACTCCGGTATCAACTTCTGTAGAGGTTCCTTGGATTATTGAAGATGATGATTTATATCAATTTTCTTAG 3084 0.4196 MTMLPGLQYNIDDLFQEAKKRWLKPIEVFYILQNHELRGFTDVPVNQPRDGSVYLFNKRVMRFFRKDGHNWRKKKDGRTVAEGHEKLKVGNVEALNCYYAHGAENPNFRRRSYWMLNPEYEHVVFVHYRETNEGTSHSSPVTQLSAFSQTHSSYTTPNPETTSIAGDSWEPNQNFSIPPGYLEVTSGIMNNGMDHLEKTDAHAFRQLEEQLSLKEKTDAQTLRQLEEQLSLNEDSFKETCPFYSEHEIPHEISVAFSGPDDHKQPYEGYNGAKDRSGNHYQELLDHDCPGGQEQTLSWTEMLETRKFSSGRKLPEQHTFEASENEKSLSSSGREMIANQETNYRLNPNSNNNENSVFAFTQDVGGVNFFPYSSVETQGTTYDYYERLVDQSLIQEPRDAYACLTVGQKQKFKITAVSPEYCYAAEATKVIIIGSFLCPSSDSTWACMFGDVEVPAEMIQDGVMCCEAPSNLLGKVTLCITSGNKEPCSEIKEFEFRSKTNSCTHCNILETEAARSPEELLLLVQFAEMLLSASTTKDDSTESGSHVSTDQKVDDDSWSHIRDAILVGNGTSSGTIDWLLQELLKDKLQHWLSCRSNERDEREGCSLSCKEQGIIHMVSGLGFEWALNPILSYGVVVNFRDINGWTALHWAARFGREKMAASLIAAGASAGAVTDPTSQNPNGLTAASIATSNDHKGLAGYLAEADLTSHLSSLTLEKCEVSKDSSELEAELTVSNVSNKYLESSDDEVSLKKTLGAVRNAAQAAALIQAAFRAHSFRKQKERESARDYRIATQAAARIQTAFRAHSFRKRREGECARDYNSAALSIQKKYRGRKGRREFLVMRHKVVKIQAHVRGYRARKQYKVMIWAVGIFDKIVLRWRRKQVGLRRSPEEIDSKEESDDEDFLKVFRQVKVHESIKKALARVHSMVPSARARQQYNRLLQMHDQVKADHGNRHDETLSLTSVEGPWIIEDHDLYQFPLETQLSTSIEGPWIIEDDDLYQFPWETPVSTSVEVPWIIEDDDLYQFS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03404 1027 ProSiteProfiles IQ motif profile. 791 820 IPR000048 GO:0005515
Vivi3g03404 1027 FunFam Calmodulin-binding transcription activator 4 isoform A 522 707 - -
Vivi3g03404 1027 Pfam IQ calmodulin-binding motif 844 863 IPR000048 GO:0005515
Vivi3g03404 1027 Pfam IPT/TIG domain 413 490 IPR002909 -
Vivi3g03404 1027 SUPERFAMILY Ankyrin repeat 613 704 IPR036770 -
Vivi3g03404 1027 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 10 948 - -
Vivi3g03404 1027 Gene3D Immunoglobulins 406 501 IPR013783 -
Vivi3g03404 1027 SMART ANK_2a 642 671 IPR002110 GO:0005515
Vivi3g03404 1027 SMART ANK_2a 681 710 IPR002110 GO:0005515
Vivi3g03404 1027 SUPERFAMILY E set domains 412 496 IPR014756 -
Vivi3g03404 1027 Gene3D - 819 866 - -
Vivi3g03404 1027 ProSiteProfiles Ankyrin repeat profile. 642 674 IPR002110 GO:0005515
Vivi3g03404 1027 ProSiteProfiles IQ motif profile. 842 866 IPR000048 GO:0005515
Vivi3g03404 1027 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vivi3g03404 1027 ProSiteProfiles IQ motif profile. 819 848 IPR000048 GO:0005515
Vivi3g03404 1027 Gene3D - 568 710 IPR036770 -
Vivi3g03404 1027 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Vivi3g03404 1027 SMART iq_5 790 812 IPR000048 GO:0005515
Vivi3g03404 1027 SMART iq_5 818 840 IPR000048 GO:0005515
Vivi3g03404 1027 SMART iq_5 759 781 IPR000048 GO:0005515
Vivi3g03404 1027 SMART iq_5 841 863 IPR000048 GO:0005515
Vivi3g03404 1027 CDD IPT 412 497 - -
Vivi3g03404 1027 MobiDBLite consensus disorder prediction 151 170 - -
Vivi3g03404 1027 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Vivi3g03404 1027 SMART CG_1_2 14 132 IPR005559 GO:0003677
Vivi3g03404 1027 MobiDBLite consensus disorder prediction 309 332 - -
Vivi3g03404 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 762 869 IPR027417 -
Vivi3g03404 1027 ProSiteProfiles Ankyrin repeat region circular profile. 642 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03404 Vivi-Chr3 57203440 57211557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03404 7 979 CAMTA Transcription Factor Family AT1G67310 46.124 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi3g03404 CG-1 3.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03404 K21596 - gmx:100791430 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03404 3 57203440 57211557 Vivi5g05557 5 158656173 158662617 PCT