Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03399 ATGAGTTTGCTTCATGTGATTGGGTTTGGTCTAAAAGTGGGGCATCTGCTTTTAGTGCTATGTTGCTGGATTGTATCTATCATTTATATCAACTGGTTCATTAGTATGGATACAAAGATGGGTTTTTTAGGAGATGGTGGCAAGATGTGGCTTAGATGGTGGGAGAAGATCTTGGGGAGTGTGTGTAGAATTAATCAGCAATATTATCAGTGTATTGGGTTTAAGAAAGTTAGGAGAAAGCTGTGGAGGAAATTGTGGTTGACATGGGTTTTGGGTTGGTGTATAGTGTCTTTGTGGATCTTTTGTTTTATGAATCTGCAAGCCACTGAGAAGAGGAAAGAGACTCTTGCTAGTATGTGTGATGAAAGAGCTAGGATGCTTCAGGATCAATTTAATGTTAGTATGAATCATATTCAAGCCATGTCGATCTTGATCTCGACTTTTCATCATGCTAAGGATCCTTCTGCCATTGATCAGAGAACGTTTGCGAAGTATACAGAAAGAACGGCTTTTGAGAGGCCGCTTACAAGTGGTGTTGCGTATGCTGTAAGGGTGCTTCAATCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGAGTATTAAGAGGATGGATACGATGGAGCAGAACCCGGTTCATGAGGATGATTATGTACCGGATGAATTGGAACCGTCGCCTATCCATGAAGAATATGCTCCTGTCATTTTTGCTCAAGATACAATTTCACATGTCATTTCTATTGATGTGCTTTCAGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAATCGGGCAAAGGGGTTTTAACTGCTCCCTTCAGGCTGTTGAAAACAAACCGTCTAGGTGTTATCCTCACGTTTGCGGTCTACAAGAGAGATCTTCCGTCAAATGCTACCCCGAATGAAAGGATTCAAGCCACTGACGGGTATCTTGGCGGGGTGTTTGAAATAGAATCGTTAGTCGAGAAATTGCTTCAGCAACTTGCTAGCAAGCAAACAGTGATTGTTAGTGTGTATGATACAACAAATCATACACATTCAATTCCCATGTATGGTTCTGATGTATCCGGCGATGCGTTCTATCATGTGAGCTTTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCTCCATGGCCGTGGTTGGCATTAGGTACATCGTTTGGCATCCTTGTAATTGTACTCCTTGTTGGACATATATGTCACGCAACTGTGAATCGAATTGCCACCATAGAGGAGGATTGCCGTAAGATGACCGAGCTTAAAAAGCTAGCTGAGGCAGCTGATGTTGCTAAATCTCAGTTCCTTGCTACTGTTTCGCACGAGATCAGAACTCCAATGAACGGTGTTTTAGGGATGATGAATATGCTCATGGACACTGATCTCGACGTAACACAACAGGAATATGTCAGAACTGCACAAGGCAGTGGAAAAGCTCTGGTGTCAATTATAAACGAAGTTTTGGATCAGGCGAAGATTGATTCTGGTAAGCTAGAGCTCGAGGCTGTGATGTTTGATATACGAGCAATCATGGATGATGTGTTGTCACTATTTTCGGAAAAATCTCAAGGAAAAGGAGTAGAGTTAGCAGTTTACGTCTCAGATCAGGTTCCTCAACAGCTTATAGGTGATCCAGGAAGGTTTCGACAAATCATTACGAATCTCATGGGTAACTCAGTTAAGTTCACAGACAAAGGACATATCTTTGTCACTATCCATCTTGTTGAGGAGGTTTTCCATTCAATAGAAGTTGAGCGGGAATCCAGTAAAGAAACAGACGATACATTAAGTGGTTCCCCGGTTGCTCATGGTCGGCGAAGCTGGGAAGGATTCAAAGCATTTAGTCACGAGGGACCTCTTGGCTCTTTCTCATCCCCGTCCTCCACTGATCTCATCAATTTGATTGTATCAGTTGAGGATACAGGTGAAGGTATTCCTCTAGAGTCTCAAGAGAAGATATTCACTCCATTCACGCAGGTAAATCCATCTATCTCCAGAAAACATGGTGGAACTGGTATTGGTTTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAAGGGAGAAATCGGATTCGCGAGTGAACCGGGCATTGGAAGCACTTTCACGTTTACGGCTGGTTTCACCAATGCATGTCCTGATTCAAATGAAATTAAAACTCAGAAAATCAGCAACCAACCTCATCCTGCATCCTCGGAGTTCAACGGTATGACTGCACTAGTTATTGATCCAAGACCCGTTCGAGCTAAAGTGTCGAGATATCACATTCAACGGCTTGGAATTCATGTTGAAATAAAACCAGATTTGAAGCAAGGTTTGTCCACGGTAACCGATGGGAATGTAGCTATCAATATGGTCCTGATTGAGCAAGAGGTTTGGGAAAGAGACACGAGCATTTCATCGCAATTTGTGAATAACATTAAAAAAATTGTTGATGTTGATAAAGGGATTCCTCCAAAACTATTTATTCTTGTTAATTCTGCTAGTTCTTTTAGAGTAAGTTCTTCTGTGACTTCATGTGTTCATAATCCAACAGTCGTCACAAAACCTTTGAGAGCAAGTATGCTAGCGGCTTCGCTACAAAGAGCCATGGGTGTTGGGAACAAAGGGAATCCTCGAAACGGAGAACATCAGAGTTTGTCTCTCCACCATCTTCTCTCTGGGAGAAAGATTCTTATTGTAGATGATAATAGTGTGAACCGCACCGTAGCCGCTGGTGCTTTGAAGAAATATGGAGCTGGTGTGGTTTGTGTAAGCAGTGGAAAAGAAGCCATCTCTATGTTGAAACCGCCTCATCAGTTTGATGCATGTTTCATGGATATTCAAATGCCTGAAATGGACGGGTTTGAAGCCACACAACGAATTCGAAAGATTGAAAACAACGTGAGCAACCAAGAATTGTATGTCCATCTACCGATTTTGGCTATGACAGCAGACGTGATGCAGGCTACACAAGAGGAATGCTTAAAGTATGGGATGGACGGATATGTTTCAAAGCCATTTGAAGCAGAACAGCTTTATAGAGAGGTTTCAAAGTTTTTCCAATCATCATGA 3078 0.423 MSLLHVIGFGLKVGHLLLVLCCWIVSIIYINWFISMDTKMGFLGDGGKMWLRWWEKILGSVCRINQQYYQCIGFKKVRRKLWRKLWLTWVLGWCIVSLWIFCFMNLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKDPSAIDQRTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVIVSVYDTTNHTHSIPMYGSDVSGDAFYHVSFLNFGDPFRKHEMHCRFKQKPPWPWLALGTSFGILVIVLLVGHICHATVNRIATIEEDCRKMTELKKLAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIDSGKLELEAVMFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSVKFTDKGHIFVTIHLVEEVFHSIEVERESSKETDDTLSGSPVAHGRRSWEGFKAFSHEGPLGSFSSPSSTDLINLIVSVEDTGEGIPLESQEKIFTPFTQVNPSISRKHGGTGIGLSISKCLVGLMKGEIGFASEPGIGSTFTFTAGFTNACPDSNEIKTQKISNQPHPASSEFNGMTALVIDPRPVRAKVSRYHIQRLGIHVEIKPDLKQGLSTVTDGNVAINMVLIEQEVWERDTSISSQFVNNIKKIVDVDKGIPPKLFILVNSASSFRVSSSVTSCVHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQSLSLHHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGKEAISMLKPPHQFDACFMDIQMPEMDGFEATQRIRKIENNVSNQELYVHLPILAMTADVMQATQEECLKYGMDGYVSKPFEAEQLYREVSKFFQSS 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03399 1025 Gene3D - 879 1023 - -
Vivi3g03399 1025 ProSiteProfiles Histidine kinase domain profile. 447 718 IPR005467 -
Vivi3g03399 1025 ProSiteProfiles Response regulatory domain profile. 898 1022 IPR001789 GO:0000160
Vivi3g03399 1025 Pfam CHASE domain 156 352 IPR006189 -
Vivi3g03399 1025 Gene3D - 408 503 - -
Vivi3g03399 1025 SMART CHASE_2 153 354 IPR006189 -
Vivi3g03399 1025 ProSiteProfiles CHASE domain profile. 153 379 IPR006189 -
Vivi3g03399 1025 FunFam Histidine kinase 4 412 503 - -
Vivi3g03399 1025 CDD REC_hyHK_CKI1_RcsC-like 899 1018 - -
Vivi3g03399 1025 SMART REC_2 897 1018 IPR001789 GO:0000160
Vivi3g03399 1025 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 494 713 IPR036890 -
Vivi3g03399 1025 PRINTS Bacterial sensor protein C-terminal signature 678 696 IPR004358 GO:0016310|GO:0016772
Vivi3g03399 1025 PRINTS Bacterial sensor protein C-terminal signature 702 715 IPR004358 GO:0016310|GO:0016772
Vivi3g03399 1025 PRINTS Bacterial sensor protein C-terminal signature 643 657 IPR004358 GO:0016310|GO:0016772
Vivi3g03399 1025 PRINTS Bacterial sensor protein C-terminal signature 661 671 IPR004358 GO:0016310|GO:0016772
Vivi3g03399 1025 Gene3D - 104 156 - -
Vivi3g03399 1025 FunFam Histidine kinase 4 157 386 - -
Vivi3g03399 1025 CDD HATPase_EvgS-ArcB-TorS-like 557 714 - -
Vivi3g03399 1025 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 552 714 IPR003594 -
Vivi3g03399 1025 SUPERFAMILY CheY-like 895 1021 IPR011006 -
Vivi3g03399 1025 CDD HisKA 440 501 IPR003661 GO:0000155|GO:0007165
Vivi3g03399 1025 CDD PRTases_typeI 851 926 IPR000836 -
Vivi3g03399 1025 ProSiteProfiles Response regulatory domain profile. 746 872 IPR001789 GO:0000160
Vivi3g03399 1025 Pfam Response regulator receiver domain 899 1017 IPR001789 GO:0000160
Vivi3g03399 1025 Gene3D - 504 719 IPR036890 -
Vivi3g03399 1025 Pfam His Kinase A (phospho-acceptor) domain 440 505 IPR003661 GO:0000155|GO:0007165
Vivi3g03399 1025 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 506 IPR036097 GO:0000155|GO:0007165
Vivi3g03399 1025 SMART HisKA_10 440 505 IPR003661 GO:0000155|GO:0007165
Vivi3g03399 1025 SMART HKATPase_4 552 718 IPR003594 -
Vivi3g03399 1025 PANTHER TWO-COMPONENT HISTIDINE KINASE 118 1015 - -
Vivi3g03399 1025 Gene3D CHASE domain 157 386 IPR042240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03399 Vivi-Chr3 57168249 57173780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03399 1 1024 Miscellaneous Gene Families AT1G27320 66.414 0.0 1361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g03399 CHASE 5.2e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03399 K14489 - gmx:100801546 1630.54