Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03392 ATGGAGTGGAATGCGAAATCTCCTGGGCAATGGGACTGGGAAAACTTATTCTTCGTGAATTCAAAACCCGCAGAAAATCACAAGTCTCAGTCTACTGATTGGAGTGCGGAGACAGATCGAGAAATCAATGTCGGAATGCTGTTTCCATCAAGTGGTAGTGGCTGTTCCGCGTCTAAACTGTTGCACGCGTCGTCCTCGAGGAGCTCAAAGTCTGCTTCCAATAATTCATCGTCAAACGGGGAGAGCAAGACATCTATGTCAACTCGGGAATGTTCTCAAGACGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCAAGCAGCAGAACCGTTGCTCACACTGAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTCCCCTGGAAGCCATTCCAAGAAAGCCTCTTCCTCTGCGGTTCCCGCGGCTCCTCCTTCGAGCGGAAAGAAAGGTAAATCGGGTTGTCAGAACATGCTACATTGCTGCCAGGTGGAAGGTTGTGGCCTCGACCTCTCTTCTTCTAAAGATTATCATCGTAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAGCGTCGATTTTGCCAACAATGCAGCAGGTTTCATTCTCTATCGGAGTTTGATGAGAAAAAAAGAAGCTGCAGACGTCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCCGGAGCAATGCAACTGAATCCATCCGCTCTTTCTTCATCACCCTATGATCAAAGACAAACAATAGGCCCATTTGCTTTTCCAAGGAACACTGCAAATTTAGCATGGCATGGCATACATAACAGCAAACTCCCCGAAACTCAAGATTTTATGCTGAAACCTCCAAAAGCCTTCAACAAGATTGTTTCTATGCTTTCTGATGATTCCAAAGGCATAGGGTCCAGGAGTACATTTCCAGGTATAGAAGATCCAACAACCTTGTCTGATCCAAATGCCACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACGATACCAAATCCCTCTCTTTAGAACACTCGAATCGACCAACCGGGGAAACTCATTCCATAGCACATGCAACTGCTAACCGCTCGCCTTTTCCTTCATCAGAATACTGGCACACTGATCCGCAACAGGCCAACTCTAGCGCTTGTATATCGTTCTCAGGTTACGACAGTAGCAGTCGCTTTCAAGACTTTCAGCTGTTCAGCGCGCCGTTCGAGTCTAGTTTCCCTTGCAACCAGCTGGATTGA 1302 0.4624 MEWNAKSPGQWDWENLFFVNSKPAENHKSQSTDWSAETDREINVGMLFPSSGSGCSASKLLHASSSRSSKSASNNSSSNGESKTSMSTRECSQDDSTGKKELSKGDPIETSQAAEPLLTLKLGKRFYFEDVSPGSHSKKASSSAVPAAPPSSGKKGKSGCQNMLHCCQVEGCGLDLSSSKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPGAMQLNPSALSSSPYDQRQTIGPFAFPRNTANLAWHGIHNSKLPETQDFMLKPPKAFNKIVSMLSDDSKGIGSRSTFPGIEDPTTLSDPNATQDVNRALSLLSTNSWGAYDTKSLSLEHSNRPTGETHSIAHATANRSPFPSSEYWHTDPQQANSSACISFSGYDSSSRFQDFQLFSAPFESSFPCNQLD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03392 433 MobiDBLite consensus disorder prediction 225 259 - -
Vivi3g03392 433 MobiDBLite consensus disorder prediction 133 156 - -
Vivi3g03392 433 Pfam SBP domain 167 240 IPR004333 GO:0003677
Vivi3g03392 433 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Vivi3g03392 433 Gene3D - 163 228 IPR036893 GO:0003677|GO:0005634
Vivi3g03392 433 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Vivi3g03392 433 MobiDBLite consensus disorder prediction 45 115 - -
Vivi3g03392 433 FunFam Squamosa promoter-binding-like protein 14 158 228 - -
Vivi3g03392 433 MobiDBLite consensus disorder prediction 49 92 - -
Vivi3g03392 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 389 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03392 Vivi-Chr3 56999408 57002911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03392 1 393 SBP-box Gene Family AT5G43270 38.480 7.21e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi3g03392 SBP 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03392 - - mtr:11441057 621.698