Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03391 ATGGAGTGGAATGCGAAATCTCCTGGGCAATGGGACTGGGAAAACTTATTCTTCGTGAATTCAAAACCCGCAGAAAATCACAAGTCTCAGTCTACTGATTGGAGTGCGGAGACAGATCGAGAAATCAATGTCGGAATGCTGTTTCCATCAAGTGGTAGTGGCTGTTCCGCGTCTAAACTGTTGCACGCGTCGTCCTCGAGGAGCTCAAAGTCTGCTTCCAATAATTCATCGTCAAACGGGGAGAGCAAGACATCTATGTCAACTCGGGAATGTTCTCAAGACGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCAAGCAGCAGAACCGTTGCTCACACTGAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTCCCCTGGAAGCCATTCCAAGAAAGCCTCTTCCTCTGCGGTTCCCGCGGCTCCTCCTTCGAGCGGAAAGAAAGGTAAATCGGGTTGTCAGAACATGCTACATTGCTGCCAGGTGGAAGGTTGTGGCCTCGACCTCTCTTCTTCTAAAGATTATCATCGTAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAGCGTCGATTTTGCCAACAATGCAGCAGGTTTCATTCTCTATCGGAGTTTGATGAGAAAAAAAGAAGCTGCAGACGTCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCCGGAGCAATGCAACTGAATCCATCCGCTCTTTCTTCATCACCCTATGATCAAAGACAAACAATAGGCCCATTTGCTTTTCCAAGGAACACTGCAAATTTAGCATGGCATGGCATACATAACAGCAAACTCCCCGAAACTCAAGATTTTATGCTGAAACCTCCAAAAGCCTTCAACAAGATTGTTTCTATGCTTTCTGATGATTCCAAAGGCATAGGGTCCAGGAGTACATTTCCAGGTATAGAAGATCCAACAACCTTGTCTGATCCAAATGCCACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACGATACCAAATCCCTCTCTTTAGAACACTCGAATCGACCAACCGGGGAAACTCATTCCATAGCACATGCAACTGCTAACCGCTCGCCTTTTCCTTCATCAGAATACTGGCACACTGATCCGCAACAGGCCAACTCTAGCGCTTGTATATCGTTCTCAGGTTACGACAGTAGCAGTCGCTTTCAAGACTTTCAGCTGTTCAGCGCGCCGTTCGAGTCTAGTTTCCCTTGCAACCAGCTGGATTGA 1302 0.4624 MEWNAKSPGQWDWENLFFVNSKPAENHKSQSTDWSAETDREINVGMLFPSSGSGCSASKLLHASSSRSSKSASNNSSSNGESKTSMSTRECSQDDSTGKKELSKGDPIETSQAAEPLLTLKLGKRFYFEDVSPGSHSKKASSSAVPAAPPSSGKKGKSGCQNMLHCCQVEGCGLDLSSSKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPGAMQLNPSALSSSPYDQRQTIGPFAFPRNTANLAWHGIHNSKLPETQDFMLKPPKAFNKIVSMLSDDSKGIGSRSTFPGIEDPTTLSDPNATQDVNRALSLLSTNSWGAYDTKSLSLEHSNRPTGETHSIAHATANRSPFPSSEYWHTDPQQANSSACISFSGYDSSSRFQDFQLFSAPFESSFPCNQLD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03391 433 MobiDBLite consensus disorder prediction 225 259 - -
Vivi3g03391 433 MobiDBLite consensus disorder prediction 133 156 - -
Vivi3g03391 433 Pfam SBP domain 167 240 IPR004333 GO:0003677
Vivi3g03391 433 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Vivi3g03391 433 Gene3D - 163 228 IPR036893 GO:0003677|GO:0005634
Vivi3g03391 433 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Vivi3g03391 433 MobiDBLite consensus disorder prediction 45 115 - -
Vivi3g03391 433 FunFam Squamosa promoter-binding-like protein 14 158 228 - -
Vivi3g03391 433 MobiDBLite consensus disorder prediction 49 92 - -
Vivi3g03391 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 389 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03391 Vivi-Chr3 56999408 57003099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03391 1 393 SBP-box Gene Family AT5G43270 38.480 7.21e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi3g03391 SBP 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03391 - - mtr:11441057 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03391 3 56999408 57003099 Vivi3g03391 3 56999408 57003099 ECH