Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03365 ATGGTGAAGTACTCCCAAGAGGCCGACAATCCCACCAAATCAACCAAGGCCAGAGGCGCTGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACCGCGTTTGCGATCAGGAAGTTGCCACTCAACAAAGCCAAAAGATATTTGGAAGATGTTTTGGCCCACAAACAGGCCATTCCTTTCCGACGCTTTTGTCGTGGTGTTGGGAGGACTGCCCAAGCCAAGAATAGGCATTCCAATGGGCAAGGACGTTGGCCTGCAAAGTCTGCTAAGTTTATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTATGTTTCTCATATCCAGGTTAATCAAGCTCAAAAGCAAAGACGTCGTACTTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAGCTTATATTATCTGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCATCCAACAAGAAGAAGTCTCAAGCTCTTCGAAGTGGTGCTTCGTCTTAG 549 0.4681 MVKYSQEADNPTKSTKARGADLRVHFKNTRETAFAIRKLPLNKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLASNKKKSQALRSGASS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03365 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vivi3g03365 182 MobiDBLite consensus disorder prediction 168 182 - -
Vivi3g03365 182 FunFam 60S ribosomal protein L17 1 175 - -
Vivi3g03365 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vivi3g03365 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vivi3g03365 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vivi3g03365 182 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vivi3g03365 182 MobiDBLite consensus disorder prediction 158 182 - -
Vivi3g03365 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vivi3g03365 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vivi3g03365 182 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03365 Vivi-Chr3 56689411 56690960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03365 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.363 2.54e-117 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03365 K02880 - jre:108982519 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03365 3 56689411 56690960 Vivi5g05575 5 158972710 158975259 PCT