Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03358 ATGTTGATGATGGATGTTTCTGAGGTTGAAGAAAGTTTCTTTGCCGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGACGTTTATCTGCGATATATTGTAAAATATTGTCCCTTTTTCCGGCCTTAGAGGCAGCTAAGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCATTACATGTAGCGCTAGAGAAGGCGAAGAATGTACTTCAGCATTGCACGGAGTCTAGTAAACTTTACTTGGCAATAACTGGGGATTCTGTTCTTGTAAAATTTGAGAAGGCCAAGTGTGCTCTTGTAGATAGTCTTAAGCTAGTGGAAGATATTGTTTCCCAAGCCATTGGGTGTCAGATTGATGAAATTGTAAACGAAATTGGTGGTATAGTGTTTGCGCTTGATCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTGCAGCAGGGTAGAAAGTTTAGCGACTCTAATGATACTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACATCTTCCAGAGCAGCTCTCACTGAAAGAAGAGCTCTGAAAAAGCTCATTGAAAGGGCTCGGGCCGAGGAAGACAAAAGGAAAGAATCAATTATTGCGTATCTTCTGCACCTTATGAGGAAATACTCCAAGATATTTAGAAATGAGTTCTCTGACGATAATGATTCTCAACCTTGTTCTCCCACCATCAACAAACCTCTCGAGAACAGTGTGCCTGGTAGTCATTGTCAAGCCTTTGATAGACAAATATCAAGACTTGGTTCCTTTAATATTAATCCAAACAATAAGAAATCGGGACAGATGGCCCTTCCACCAGAAGAGTTAAGGTGTCCAATCTCTCTACAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAGACTTATGAAAGAGCTTGTATAGAAAAATGGTTTAATGATGGTCACAACACCTGTCCAAAGACTCAACAGAAGCTTGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTCGTGGCTAGTTGGTGTGAACAGAATGGAATTCCCGTTCCTGAAGGCCCTCCAGAATCGCTTGATTTTAACTACTGGAGATTGGCGTTATCAGATTCCGATTCCACAAATTCAAGATCCGTAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTTGTTCCTCTTGAAGAGAATGTTATCTTAGAGAAAACCGAGGGAAATGTAACGGAAAGCTTGCCGGCACAAGAAGAGGAAGACAGTGAGAAGTATCTTAGTTATGTGAAAGTATTGACCAAAGGGAGCAATTGGAAGAGAAAGAGTAAAATAGTAGAGCGGTTAAGGCTTTTGTTGCGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTATCTGCAATCAGCCGTGCGTGAAGGGAATGCGGTAGCTCAGGAAAATGGAGCTATGGCTCTGTTCAACCTGGCCGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCAGGAATCTTATCGTTGTTGGAGGAAATGATTTCAAACCCCAGATCGTACGGTTGTGCAACCGCACTTTATTTGAATCTTTCTTGCCTTGAAGAAGCCAAGCAAACGATTGGCACGAGTCAGGCCGTGCAGTTCCTTATCCAGATGCTTCATACTAAAACAGAAGTTCAGTGCAAGCTAGATGCCCTCCACGCACTCTATAATATTTCTACCGTACCCTCAAATATCCCGAACCTTCTTTCATCTGGCATTATCAATGGCCTACAATCCATTCTTGAAGGCCAGACAGATTGCACGTGGACAGAAAAATGCATAGCTGTTTTAGTTAATTTGGCCATTTCTCAAGCTGGAAGAGAGGAAATGATCTTGAATTCTGAACTCATAAGCACATTGGCTTCTATACTCGATACCGGTGAATCCCTTGAGCAGGAACAAGCTGTGTCTTGTCTTCTAATATTATGCAACAGAAGTGAGAAATGTTGTGACATGGTCCTCCAAGAAGGTGCTATACCTGCATTAGTTTCAATATCAGTAAATGGAACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGACAGCGAGATCATTCACCTGCCAAGACTCAACTATGCTCACCTGAAGCTGGTGAATTGTCCATGCCCCCTCAAGAAGCGAAACCGCTATGTAAATCAATATCTAGAAGAAAAGTGGGGAAAGCTCTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTATACCAGTGTTAG 2298 0.4191 MLMMDVSEVEESFFAASDAKLHGEMCRRLSAIYCKILSLFPALEAAKPRSKSGIQALCSLHVALEKAKNVLQHCTESSKLYLAITGDSVLVKFEKAKCALVDSLKLVEDIVSQAIGCQIDEIVNEIGGIVFALDPSEKQVGDDLIALLQQGRKFSDSNDTSELECFHMAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKIFRNEFSDDNDSQPCSPTINKPLENSVPGSHCQAFDRQISRLGSFNINPNNKKSGQMALPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGIPVPEGPPESLDFNYWRLALSDSDSTNSRSVNSVNSCKLKGVKVVPLEENVILEKTEGNVTESLPAQEEEDSEKYLSYVKVLTKGSNWKRKSKIVERLRLLLRDDEEARIFMGANGFVEALFQYLQSAVREGNAVAQENGAMALFNLAVNNNRNKELMISAGILSLLEEMISNPRSYGCATALYLNLSCLEEAKQTIGTSQAVQFLIQMLHTKTEVQCKLDALHALYNISTVPSNIPNLLSSGIINGLQSILEGQTDCTWTEKCIAVLVNLAISQAGREEMILNSELISTLASILDTGESLEQEQAVSCLLILCNRSEKCCDMVLQEGAIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKTQLCSPEAGELSMPPQEAKPLCKSISRRKVGKALSFLWKSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03358 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Vivi3g03358 765 Coils Coil 178 198 - -
Vivi3g03358 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Vivi3g03358 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Vivi3g03358 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
Vivi3g03358 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Vivi3g03358 765 SUPERFAMILY RING/U-box 274 355 - -
Vivi3g03358 765 SUPERFAMILY ARM repeat 429 707 IPR016024 -
Vivi3g03358 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Vivi3g03358 765 PANTHER U BOX DOMAIN-CONTAINING 26 709 - -
Vivi3g03358 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Vivi3g03358 765 SMART arm_5 540 581 IPR000225 GO:0005515
Vivi3g03358 765 SMART arm_5 455 499 IPR000225 GO:0005515
Vivi3g03358 765 SMART arm_5 501 539 IPR000225 GO:0005515
Vivi3g03358 765 MobiDBLite consensus disorder prediction 709 733 - -
Vivi3g03358 765 Gene3D - 409 718 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03358 Vivi-Chr3 56612316 56616717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03358 4 764 U-box Gene Family AT1G24330 65.000 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03358 - - gmx:100804344 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03358 3 56612316 56616717 Vivi3g03358 3 56612316 56616717 ECH
Vivi3g03358 3 56612316 56616717 Vivi5g05586 5 159069461 159073775 PCT