Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03346 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTCTCCAACAGCAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCGCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCATTGGAATGGTGGATAGTATTGGTTATGCGCAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGAGCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTGTCTGACCAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCCCCCCCTTTGAGTGTGAATCTGGTCATGAAACCATGGCTGAAGTCCTTAGGTTTTAG 1044 0.4205 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPAKSILFTSFSDIITGRFDKHVLIHVIGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVSLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWFYRACHMCQSIARGDSPPPPFECESGHETMAEVLRF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03346 347 Gene3D - 3 104 IPR012340 -
Vivi3g03346 347 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi3g03346 347 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi3g03346 347 Gene3D - 110 249 IPR012340 -
Vivi3g03346 347 CDD RPA1_DBD_A_like 19 103 - -
Vivi3g03346 347 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi3g03346 347 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03346 Vivi-Chr3 56334658 56336207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03346 8 328 Core DNA Replication Machinery Family AT5G45400 20.991 1.70e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03346 - - vvo:131613993 661.373