Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03340 ATGACGACAGGTAGAGATGGAGATTATCACCATCACAAATTCAGGGACAGTGAGTCTGATTTTGATATTTCCAGGCGTGGTTTTACTGATAATAATTTTAATGAGTATGACGGGGTTAGAAATGGTAAGGGTCGGAGGAGGGATTCGAGAGATAGAATTATTATGAGGGAGAGAGAAATTTCAAATGGTAGTTACCGGTCATCTTCGAGTAGGAGTGGCTCTAGCAGTAGTGGCGGCCTTAGTGGCAGGCTTGGTCCTAGAAGATGTGATTTTTCTGTCAAGACTATGGATAGAGAGCCGGGTGAACTTTCTAGTGAGAGTGGATCCGACGTTGAAGCAGAGTCACTGGTAAAACGCCATAAGGTTGTGATGGGTAAAGAGTTTGATTATGATGTTGAATCAGAATCACTCTTAAAACACCATGAGGTTGCAATGGGCAAAGAAAATGGGACTGGATCTCCGTTACAAAGGAAAAGGAAATTTTCACCAATAGTATGGGATCAAGATGACCATAAAGTGACTAATTTATCCAAGCTTAAGGTTGTCACAACAACAGTGACTGCTGTTGCTTGTCCACCTCCATTTCCAAGAGCAGTCGACGAGTCGGCTGATGTTCCTTACAATGGAGTTGAAGTTCATCCTCCTGAGAATCTTGTGTTGCCGACTGCAGTGGATCCTTCTATGGTGACTGAGTCAGTTCAAAATGCCGAACCTGAGTCTCCTATAGGTTTGCGTTCGTCTGAGCAGAGGTTGGTTAATGGGAACACTGAGCAACCAGAAGTTGAAGATTACGTTTCAACTCACAATATATCATCTTCAAGATGGGCATCTGGAGATGGCTCTTCGGATGATGAAGGTGAAATCATTGATGGGAAGGAAGGCCTTAAAAAGAGGAGGCTATCTCTTGAGGCGGGTGTGAGAATACGAAACAAGATGTTGAAACCAGAGGAATCTAAAATTGCAGGTTTTGAAATGTCTAGAGCCAAATCATCCGAATCTGAAGAAAGAGGTAGCACTGGGAGATATTCCGGTGAGGATGACTATCCTGGTATTGAGGCAGGGAAGGATAACTACATGGAGATTGACAGCGGAGTTTGCAAAAGTGATCCAAGTGGTAGTCACACAAATACTGATTCTGAACGCGAAGATGATTGCAGGGAAAGTATGGAACCTCCGTCTCCACCCCAGAGAGTTGTCAACATGCTTCAGGGATGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATTGATGAAGGAACATATGGTGTTGTATATAGGGCCAAAGACAAGAAGACCGGTGAAATAGTGGCACTGAAAAAGGTTAAGATGGAGAAGGAAAAAGAAGGCTTTCCACTGACTTCTCTGAGGGAAATAAACATACTTCTTTCCTTTCATCATCCATTCATAGTTGACGTTAAGGAAGTAGTGGTAGGTAGTAGCCTTGATAGTATTTTTATGGTTATGGAATACATGGAACACGATCTTAAAGGGCTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTGTTAGAAGGTGTGAAGTATCTTCACGACAACTGGGTGCTTCACAGGGACTTGAAGACCTCAAACCTGCTTCTGAATAATAGGGGCGAGTCAAAAATTTGTGATTTCGGATTAGCTCGTCAGTATGGGAGTCCATTGAAACCTTATACATCATTGGTGGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTTTGGGGACAAAGCAGTATTCAACAGCGATCGACATGTGGTCCTTGGGTTGTATAATGGCCGAGCTTTTGTCCAAGGAACCATTGTTTAATGGGAGGACTGAATTTGATCAACTTAACAAGATTTTCAGAATTCTTGGCACCCCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTGCCTCTAGTCAAGGCCAATTATGTCAAGCACCAGCTTCAACTTTGTGTGGTTCTGGTATAA 1983 0.4286 MTTGRDGDYHHHKFRDSESDFDISRRGFTDNNFNEYDGVRNGKGRRRDSRDRIIMREREISNGSYRSSSSRSGSSSSGGLSGRLGPRRCDFSVKTMDREPGELSSESGSDVEAESLVKRHKVVMGKEFDYDVESESLLKHHEVAMGKENGTGSPLQRKRKFSPIVWDQDDHKVTNLSKLKVVTTTVTAVACPPPFPRAVDESADVPYNGVEVHPPENLVLPTAVDPSMVTESVQNAEPESPIGLRSSEQRLVNGNTEQPEVEDYVSTHNISSSRWASGDGSSDDEGEIIDGKEGLKKRRLSLEAGVRIRNKMLKPEESKIAGFEMSRAKSSESEERGSTGRYSGEDDYPGIEAGKDNYMEIDSGVCKSDPSGSHTNTDSEREDDCRESMEPPSPPQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPFIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGESKICDFGLARQYGSPLKPYTSLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLNKIFRILGTPNETIWPGFSKLPLVKANYVKHQLQLCVVLV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03340 660 SMART serkin_6 411 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03340 660 Gene3D Phosphorylase Kinase; domain 1 396 493 - -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 322 396 - -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 1 88 - -
Vivi3g03340 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Vivi3g03340 660 FunFam cyclin-dependent kinase G-2 isoform X1 396 493 - -
Vivi3g03340 660 Pfam Protein kinase domain 411 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03340 660 MobiDBLite consensus disorder prediction 61 81 - -
Vivi3g03340 660 FunFam Mitogen-activated protein kinase 492 650 - -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 322 353 - -
Vivi3g03340 660 SUPERFAMILY Protein kinase-like (PK-like) 403 650 IPR011009 -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 39 59 - -
Vivi3g03340 660 Gene3D Transferase(Phosphotransferase) domain 1 494 656 - -
Vivi3g03340 660 PANTHER CELL DIVISION PROTEIN KINASE 409 642 - -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 231 279 - -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 374 390 - -
Vivi3g03340 660 MobiDBLite consensus disorder prediction 231 290 - -
Vivi3g03340 660 ProSiteProfiles Protein kinase domain profile. 411 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03340 660 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g03340 660 CDD STKc_CDC2L1 405 652 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03340 Vivi-Chr3 56230746 56234026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03340 402 642 Core Cell Cycle Gene Families AT5G10270 51.953 2.94e-84 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vivi3g03340 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03340 K08818 - gmx:100793729 794.267