Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03316 ATGTATCTATCATCCGAAAAGCCTCGTCCAATCGATTTCTACAAGGAAGAATCACGCGACATGATGATGGAAGTAGTAACCACCACCGATCTCCAACCGCCGCAGCTCCACCTCCAACAACAACAACCGCCGCAAATGATCCTCGGCGCGGAGAGCAGCGGCGAGGACCCGGAGATGGAGATCAAAGCCCCCAAGAAACGGGCCGAGACTTGGGTACAAGACGAGACGCGGAGTCTCATTGGTCTACGACGCGAGATGGATTCGCTTTTCAACACTTCGAAGTCGAATAAGCATCTTTGGGAACAGATTTCGGCGAAAATGAGGGAAAAGGGTTTCGATCGGTCGCCGACTATGTGTACCGATAAATGGAGGAATCTCTTGAAGGAGTTTAAGAAAGCTAAGCATCATGATAGAGGGGGGAGTGGGTCTGGGAAAATGTCGTGTTATAAGGAGATTGATGAGATCTTGAGAGATAGGAATAAGTGTACTCAGTATAAGAGTCCTACGCCTAGTTCTAAAGTTGAAGCTTCTTACATGCAGTTTTCTGATAAAGGTATTGATGATGCCAACATTTCTTTTGGGCCAGTCGAAGCTTCTGGGAGACCAACACTCAATCTTGAAAGAAGTTTGGATCATGATGGACACCCTCTTGCCATTGCTGCAGCTGATGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCTGGAAATGGTGGGGAAAGTCAGTCTTGTTGTGGAAGGGTTATATCAGTCAAATGGGGCGATTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAGGAGGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGAACAGATTATCAGAAGTATTGACCGGGACATGCCTATAGGAAATTACACTCTTCATCTTGATGAAGGAATGGCCATTAAAGTATGCCTATATGATGAGTCTGACCATATCCCTGTGCATACTGTGCATACTGAAGAGAAGATATTTTATACAGAAGATGATTACCGTGATTTTCTGGCACGCCGTGCTTGGACATGCCTTCGAGAATTTGATGGTTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATACCGAGGGGTGAGTTGA 1158 0.4568 MYLSSEKPRPIDFYKEESRDMMMEVVTTTDLQPPQLHLQQQQPPQMILGAESSGEDPEMEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGGSGSGKMSCYKEIDEILRDRNKCTQYKSPTPSSKVEASYMQFSDKGIDDANISFGPVEASGRPTLNLERSLDHDGHPLAIAAADVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDESDHIPVHTVHTEEKIFYTEDDYRDFLARRAWTCLREFDGYRNIDNMDDLRPGAIYRGVS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03316 385 ProSiteProfiles Myb-like domain profile. 63 127 IPR001005 -
Vivi3g03316 385 FunFam trihelix transcription factor GT-1 71 133 - -
Vivi3g03316 385 Pfam Myb/SANT-like DNA-binding domain 70 155 IPR044822 -
Vivi3g03316 385 SMART sant 67 129 IPR001005 -
Vivi3g03316 385 PANTHER FI21293P1 47 383 - -
Vivi3g03316 385 CDD GT1 69 134 - -
Vivi3g03316 385 Gene3D - 71 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03316 Vivi-Chr3 56005165 56011379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03316 18 384 Trihelix Transcription Factor Family AT3G25990 68.351 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g03316 Myb_DNA-bind_4 6.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03316 - - tpra:123907830 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03316 3 56005165 56011379 Vivi3g03316 3 56005165 56011379 ECH