Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03303 ATGGATAATGGTTGCTTCTCTACGCCGAGGCGTGATTTTCCTGCTGGTTTACGAGTTCTTGTTGTCGATGATGATCCAACTTGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACAAGCTCTAAACTTGCTTCGCGAAAGGAAAGACGGATATGATATAGTCATCAGCGATGTAAACATGCCTGACATGGACGGTTTCAAGCTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACGAGCAGGGTGATGAAAGGCGTTCAACATGGAGCGTGCGATTATCTTCTTAAGCCTATAAGGATGAAAGAGCTGCGAAACATATGGCAACATGTTTTCAGAAAAAGGATACACGAGGTTAGAGAATTTGAAAATTTCGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGATCTGTCTGAGGAGGGGAACATGTTTGCTTTAGAAGATATGACCTCATCGAAGAAGCGCAAAGATGTAGATGGCAAACACGACGACAGAGAATTTTTGGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAAAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACAGGCTTTACTTGAGCAGGCTTCAGAAAGATAATGAACAAAAATCTACCTCAAGTGGAATGAAGCATTCTGATTTACCTTTAAAAGATGTAGGAAGTTTTGGATTTCAGAACTCGGCAGACAAGCAACAAAACGATGCTTCAATTGATCGATACAACTATTCAGAAGGAACCTTACAACACCAGAACATGGAAACTAAAAGTCGTGAAAGTAATCCCAAAGGAATCGTTCCACATTCCACTACGACAGAAAAAGTAAAAGCTTTTGTCCCTCTTGAAACAGAAGGAAAGCATGCAGGATTCCAAAGCACCATGTCGACGACACAGTATTCTTGGACTGAAATTCCGAAAACACAGCTAAAAAAAGAACAGAAGCCACTTGTTCATCCAGAGGATAACTTCAACCTATTGCCCTTACATGGTAAGCAGCATAGCATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCTACTCCCTCTATGGCGAAGCAAAATGTTGCTGGTTGTGTAGAAACAAAACCAAGGTTTGCTGATTACAAGAAAGACTACACTACTAGTTCAGTGAGTTCGATAAGAAGTTCAGTTGACACTTTTCCTTTCCAACCCGGAAACCTGATGGTGAATTATCAACCTTCACAACCCACTTCAACCATAAATTTGGGCTTAAAAACACAGTCATACAATAATCTCAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTTGGAGGTGAAGCTGCTTCTGCTGCGCCTTTGGACGAAGACCTGTATTTCTATTGGCATAATATGAACTTTGGTCAGCCGAATATTGGGATGTCTGAGTATTATGATCCAGGGCTTCTCACAGAAGTTCCAAACCACTTATATGATTCAGCAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA 1677 0.4001 MDNGCFSTPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARQALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSDLSEEGNMFALEDMTSSKKRKDVDGKHDDREFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSTSSGMKHSDLPLKDVGSFGFQNSADKQQNDASIDRYNYSEGTLQHQNMETKSRESNPKGIVPHSTTTEKVKAFVPLETEGKHAGFQSTMSTTQYSWTEIPKTQLKKEQKPLVHPEDNFNLLPLHGKQHSIQVDQSQSIASISSTPSMAKQNVAGCVETKPRFADYKKDYTTSSVSSIRSSVDTFPFQPGNLMVNYQPSQPTSTINLGLKTQSYNNLSCISDLESYQRNLLFGGEAASAAPLDEDLYFYWHNMNFGQPNIGMSEYYDPGLLTEVPNHLYDSADYSVIDQGLFIA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03303 558 SMART REC_2 17 129 IPR001789 GO:0000160
Vivi3g03303 558 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Vivi3g03303 558 Gene3D - 17 198 - -
Vivi3g03303 558 FunFam Two-component response regulator 195 258 - -
Vivi3g03303 558 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vivi3g03303 558 CDD REC_typeB_ARR-like 19 133 - -
Vivi3g03303 558 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vivi3g03303 558 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Vivi3g03303 558 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vivi3g03303 558 SUPERFAMILY CheY-like 16 144 IPR011006 -
Vivi3g03303 558 Gene3D - 199 258 - -
Vivi3g03303 558 FunFam Two-component response regulator 17 175 - -
Vivi3g03303 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 316 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03303 Vivi-Chr3 55875219 55878434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03303 13 275 Response Regulator Gene Family AT2G25180 55.639 1.24e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi3g03303 Response_reg 5e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03303 K14491 - gmx:100797421 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03303 3 55875219 55878434 Vivi3g03303 3 55875219 55878434 ECH