Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03298 ATGTCTTTATTTTCTCTTTTTCTCTTCACACTTCTTTTCTTAATATCACACACAACTTCACAACTTCAAGAGTTTATAAGCATTGATTGTGGAGGAACAACAAGTAACTATACAGACATATCCACAGGGATTACATGGATTTCAGATTCTGAGATCATGAAAAATGGTGAGACAGTGAAAGTGAAAAACCCTAATGGGAACAAAGTTCAGTATGAGAAAAGAAGAGATTTTCCAACTGATGGTAGGAAATACTGTTATACACTTGAGACTGAGGAGAGAAGAAGGTATTTGGTGAGAGCTAGTTTTCAGTATGGGAGTTTGGAAAATGGAGATACATATCCTCAGTTTCAGCTTTTTTTGGATGCAACTAAATGGGCTACTGTGTCTATTTATGATGATTCAAGGGTTTATGTTAAGGAGATGATTTTTAGGGCAGGTTCTAGTTCTGTTGATGTTTGTGTTTGTTGTGCTACTACTGGTTCTCCTTTTATATCTACTCTTGAGCTTAGGCCTTTGAATCTTTCTATGTATGCTACTGATTTTGAGGATGATTTTTTCTTGAAAGTGGCTGCCAGAATTAATTTTGGTGCTCCAACTGAGGATGCTGTTAGGTATCCAGAAGATCCGTACGATAGAATATGGGAGTCAGATCTTGTAAAAAGACAAAATTATCTTGTTGGAGTAGCAACAGGCACAGAGAGAATTAGCACTACAAGGAGCATAGGAATAGATACAAGAGAATACCCTCCAGTTAAGGTGATGCAAACTGCAGTTGTTGGCACTAAAGGATTACTTAGTTACAGACTCAACTTAGAAGACTTTCCTGCGAATGCTAGAGCTTATGCTTACTTGGCAGAAATTGAAGATTTGGGTCAGAATGAGACTAGGAAATTCAAATTGGAGCAACCTTATATACCTGATTATAGCAATGCGGTGGTGAACATAGCTGAGAATGCTAATGGTAGCTACACCCTTTATGAACCAAGTTACATGAATGTGAGTTTGGAGTTTGTTCTTTCCTTCTCATTTAAGAGGACGCGCGATTCTACTAGAGGGCCTCTACTAAATGCTATGGAAATAAGCAAATATCAAGAAATTGCTTCTAAGACCTTCAAGCAAGATTCAAATTCTGTAAGTGCGTTTGCTTCCTTGTCTGATGAAATTATCCCAAAGAACGAAGGTGATCCTTGTGTTCCAACTCCATGGGAGTGGGTGAACTGTAGTACCGCTACACCTCCAAGAATTACGAAGATAAATTTGTCAAGAAGGAACGTGACAGGTGAAATTCCACAAGAGCTCAACAACATGGAAGCCTTGGAAGAATTGTGGTTAGATGGAAACTCGCTAACAGGAAATTTACCTGACCTGAGCAATCTTATCAATCTAAAGATTGTACATCTAGAGAACAATCAGTTGAGCGGTTCACTACCGCCTTACCTCGGTAGCTTGCCAAGTTTACAAGCATTGTACATACAGAATAACTCATTTATCGGGGAAATACCAGCAGGATTAATGTCTTCAAAAATCACTTTCAACTATGATTATAATCCTGAACTACACAGAAAGAACAAAAAGCATTTTCAGTTGATAATAGGAGTTTCGATCGGTGTACTAGTGATTCTATTAGTCTTGTTCATAGGGAGTTTGTTGTTATTACATTACCTAAGGAGAACGGCTTCTCAAAAGAAAAGTGATGAAAAAGCCTTATTGTGCTTAGGTATTCGGGGCCGCGGTAATAATAAACATTTAACTGGATACTCTTTCGGCCGAGATGGGAATTTAATGGATGAAGGTACTGCATACTATATTAATCTCTCAGATTTGAGAGAAGCTACAGACAATTTTTCAAAGAAAATTGGAAAAGGAAGCTTTGGATCCGTCTATTATGGAAAAATGAAAGACGGAAAAGAGATCGCAGTTAAGACTATGACTGATCCATCAAGCCATGGGAACCATCAATTTGTAACCGAGGTAGCTCTCCTATCGAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAATATCAGCATATTCTTGTTTACGAGTATATGCACAATGGCACTCTAAGAGATCACATTCATGAATGTTCGAGTCAGAAGCAGTTAGACTGGATAATTCGGCTTCGAATTGCAGAAGATTCTGCCAAAGGTCTTGAATACTTACACACAGGATGCAATCCTAGTATCATTCATCGAGACGTGAAGACGAGCAACATTCTCCTAGACATTAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCGAGACTAGCAGAAGAAGATTTAACTCATATATCAAGTGTTGCAAGAGGAACTGTCGGATACCTGGATCCTGAGTACTATGCAAATCAGCAATTGACCGAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTATTGGAACTGATATCTGGAAAGAAGCCGGTATCACCAGAAGATTATGGTCCCGAAATGAATATAGTTCATTGGGCAAGATCGTTAATTCGTAAAGGTGATATAATAAGCATTATGGACCCTTTGCTAATAGGAAATGTGAAAACAGAATCAATTTGGAGGGTTGCTGAAATAGCCATGCAATGTGTAGAGCCACATGGTGCTTCTAGGCCAAGGATGCAAGAAGTGATTTTGGCTATACAAGATGCTTCAAAGATAGAGAAAGGAACAGAAAGTCAAATGAAAGTATCATCCTCAGGTGATTCAAAACCACAATCTTCAAGGAAAACTTTGCTTACAAGTTTTCTTGAAATTGAGAGCCCTGATTTGTCAAATGGATGTCTTCCATCAGCAAGATAA 2808 0.3821 MSLFSLFLFTLLFLISHTTSQLQEFISIDCGGTTSNYTDISTGITWISDSEIMKNGETVKVKNPNGNKVQYEKRRDFPTDGRKYCYTLETEERRRYLVRASFQYGSLENGDTYPQFQLFLDATKWATVSIYDDSRVYVKEMIFRAGSSSVDVCVCCATTGSPFISTLELRPLNLSMYATDFEDDFFLKVAARINFGAPTEDAVRYPEDPYDRIWESDLVKRQNYLVGVATGTERISTTRSIGIDTREYPPVKVMQTAVVGTKGLLSYRLNLEDFPANARAYAYLAEIEDLGQNETRKFKLEQPYIPDYSNAVVNIAENANGSYTLYEPSYMNVSLEFVLSFSFKRTRDSTRGPLLNAMEISKYQEIASKTFKQDSNSVSAFASLSDEIIPKNEGDPCVPTPWEWVNCSTATPPRITKINLSRRNVTGEIPQELNNMEALEELWLDGNSLTGNLPDLSNLINLKIVHLENNQLSGSLPPYLGSLPSLQALYIQNNSFIGEIPAGLMSSKITFNYDYNPELHRKNKKHFQLIIGVSIGVLVILLVLFIGSLLLLHYLRRTASQKKSDEKALLCLGIRGRGNNKHLTGYSFGRDGNLMDEGTAYYINLSDLREATDNFSKKIGKGSFGSVYYGKMKDGKEIAVKTMTDPSSHGNHQFVTEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHECSSQKQLDWIIRLRIAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGPEMNIVHWARSLIRKGDIISIMDPLLIGNVKTESIWRVAEIAMQCVEPHGASRPRMQEVILAIQDASKIEKGTESQMKVSSSGDSKPQSSRKTLLTSFLEIESPDLSNGCLPSAR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03298 935 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Vivi3g03298 935 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 689 896 - -
Vivi3g03298 935 Gene3D Ribonuclease Inhibitor 367 527 IPR032675 -
Vivi3g03298 935 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Vivi3g03298 935 FunFam serine/threonine-protein kinase PBS1-like 590 688 - -
Vivi3g03298 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Vivi3g03298 935 CDD STKc_IRAK 619 880 - -
Vivi3g03298 935 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 506 - -
Vivi3g03298 935 SMART serkin_6 613 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03298 935 Gene3D Transferase(Phosphotransferase) domain 1 689 907 - -
Vivi3g03298 935 Pfam Protein tyrosine and serine/threonine kinase 615 880 IPR001245 GO:0004672|GO:0006468
Vivi3g03298 935 SUPERFAMILY Protein kinase-like (PK-like) 599 880 IPR011009 -
Vivi3g03298 935 SUPERFAMILY L domain-like 396 507 - -
Vivi3g03298 935 Pfam Malectin-like domain 28 362 IPR024788 -
Vivi3g03298 935 ProSiteProfiles Protein kinase domain profile. 613 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03298 935 MobiDBLite consensus disorder prediction 891 914 - -
Vivi3g03298 935 PANTHER OS07G0107800 PROTEIN-RELATED 456 886 - -
Vivi3g03298 935 Gene3D Phosphorylase Kinase; domain 1 590 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03298 Vivi-Chr3 55810359 55816203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03298 10 935 Receptor kinase-like Gene Family AT1G67720 69.322 0.0 1292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vivi3g03298 Malectin_like 2.8e-86 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03298 - - gmx:100807148 1534.62