Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03297 ATGTCTTTATTTTCTCTTTTTCTCTTCACACTTCTTTTCTTAATATCACACACAACTTCACAACTTCAAGAGTTTATAAGCATTGATTGTGGAGGAACAACAAGTAACTATACAGACATATCCACAGGGATTACATGGATTTCAGATTCTGAGATCATGAAAAATGGTGAGACAGTGAAAGTGAAAAACCCTAATGGGAACAAAGTTCAGTATGAGAAAAGAAGAGATTTTCCAACTGATGGTAGGAAATACTGTTATACACTTGAGACTGAGGAGAGAAGAAGGTATTTGGTGAGAGCTAGTTTTCAGTATGGGAGTTTGGAAAATGGAGATACATATCCTCAGTTTCAGCTTTTTTTGGATGCAACTAAATGGGCTACTGTGTCTATTTATGATGATTCAAGGGTTTATGTTAAGGAGATGATTTTTAGGGCAGGTTCTAGTTCTGTTGATGTTTGTGTTTGTTGTGCTACTACTGGTTCTCCTTTTATATCTACTCTTGAGCTTAGGCCTTTGAATCTTTCTATGTATGCTACTGATTTTGAGGATGATTTTTTCTTGAAAGTGGCTGCCAGAATTAATTTTGGTGCTCCAACTGAGGATGCTGTTAGGTATCCAGAAGATCCGTACGATAGAATATGGGAGTCAGATCTTGTAAAAAGACAAAATTATCTTGTTGGAGTAGCAACAGGCACAGAGAGAATTAGCACTACAAGGAGCATAGGAATAGATACAAGAGAATACCCTCCAGTTAAGGTGATGCAAACTGCAGTTGTTGGCACTAAAGGATTACTTAGTTACAGACTCAACTTAGAAGACTTTCCTGCGAATGCTAGAGCTTATGCTTACTTGGCAGAAATTGAAGATTTGGGTCAGAATGAGACTAGGAAATTCAAATTGGAGCAACCTTATATACCTGATTATAGCAATGCGGTGGTGAACATAGCTGAGAATGCTAATGGTAGCTACACCCTTTATGAACCAAGTTACATGAATGTGAGTTTGGAGTTTGTTCTTTCCTTCTCATTTAAGAGGACGCGCGATTCTACTAGAGGGCCTCTACTAAATGCTATGGAAATAAGCAAATATCAAGAAATTGCTTCTAAGACCTTCAAGCAAGATTCAAATTCTGTAAGTGCGTTTGCTTCCTTGTCTGATGAAATTATCCCAAAGAACGAAGGTGATCCTTGTGTTCCAACTCCATGGGAGTGGGTGAACTGTAGTACCGCTACACCTCCAAGAATTACGAAGATAAATTTGTCAAGAAGGAACGTGACAGGTGAAATTCCACAAGAGCTCAACAACATGGAAGCCTTGGAAGAATTGTGGTTAGATGGAAACTCGCTAACAGGAAATTTACCTGACCTGAGCAATCTTATCAATCTAAAGATTGTACATCTAGAGAACAATCAGTTGAGCGGTTCACTACCGCCTTACCTCGGTAGCTTGCCAAGTTTACAAGCATTGTACATACAGAATAACTCATTTATCGGGGAAATACCAGCAGGATTAATGTCTTCAAAAATCACTTTCAACTATGATTATAATCCTGAACTACACAGAAAGAACAAAAAGCATTTTCAGTTGATAATAGGAGTTTCGATCGGTGTACTAGTGATTCTATTAGTCTTGTTCATAGGGAGTTTGTTGTTATTACATTACCTAAGGAGAACGGCTTCTCAAAAGAAAAGTGATGAAAAAGGTATTCGGGGCCGCGGTAATAATAAACATTTAACTGGATACTCTTTCGGCCGAGATGGGAATTTAATGGATGAAGGTACTGCATACTATATTAATCTCTCAGATTTGAGAGAAGCTACAGACAATTTTTCAAAGAAAATTGGAAAAGGAAGCTTTGGATCCGTCTATTATGGAAAAATGAAAGACGGAAAAGAGATCGCAGTTAAGACTATGACTGATCCATCAAGCCATGGGAACCATCAATTTGTAACCGAGGTAGCTCTCCTATCGAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAATATCAGCATATTCTTGTTTACGAGTATATGCACAATGGCACTCTAAGAGATCACATTCATGAATGTTCGAGTCAGAAGCAGTTAGACTGGATAATTCGGCTTCGAATTGCAGAAGATTCTGCCAAAGGTCTTGAATACTTACACACAGGATGCAATCCTAGTATCATTCATCGAGACGTGAAGACGAGCAACATTCTCCTAGACATTAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCGAGACTAGCAGAAGAAGATTTAACTCATATATCAAGTGTTGCAAGAGGAACTGTCGGATACCTGGATCCTGAGTACTATGCAAATCAGCAATTGACCGAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTATTGGAACTGATATCTGGAAAGAAGCCGGTATCACCAGAAGATTATGGTCCCGAAATGAATATAGTTCATTGGGCAAGATCGTTAATTCGTAAAGGTGATATAATAAGCATTATGGACCCTTTGCTAATAGGAAATGTGAAAACAGAATCAATTTGGAGGGTTGCTGAAATAGCCATGCAATGTGTAGAGCCACATGGTGCTTCTAGGCCAAGGATGCAAGAAGTGATTTTGGCTATACAAGATGCTTCAAAGATAGAGAAAGGAACAGAAAGTCAAATGAAAGTATCATCCTCAGGTGATTCAAAACCACAATCTTCAAGGAAAACTTTGCTTACAAGTTTTCTTGAAATTGAGAGCCCTGATTTGTCAAATGGATGTCTTCCATCAGCAAGATAA 2793 0.382 MSLFSLFLFTLLFLISHTTSQLQEFISIDCGGTTSNYTDISTGITWISDSEIMKNGETVKVKNPNGNKVQYEKRRDFPTDGRKYCYTLETEERRRYLVRASFQYGSLENGDTYPQFQLFLDATKWATVSIYDDSRVYVKEMIFRAGSSSVDVCVCCATTGSPFISTLELRPLNLSMYATDFEDDFFLKVAARINFGAPTEDAVRYPEDPYDRIWESDLVKRQNYLVGVATGTERISTTRSIGIDTREYPPVKVMQTAVVGTKGLLSYRLNLEDFPANARAYAYLAEIEDLGQNETRKFKLEQPYIPDYSNAVVNIAENANGSYTLYEPSYMNVSLEFVLSFSFKRTRDSTRGPLLNAMEISKYQEIASKTFKQDSNSVSAFASLSDEIIPKNEGDPCVPTPWEWVNCSTATPPRITKINLSRRNVTGEIPQELNNMEALEELWLDGNSLTGNLPDLSNLINLKIVHLENNQLSGSLPPYLGSLPSLQALYIQNNSFIGEIPAGLMSSKITFNYDYNPELHRKNKKHFQLIIGVSIGVLVILLVLFIGSLLLLHYLRRTASQKKSDEKGIRGRGNNKHLTGYSFGRDGNLMDEGTAYYINLSDLREATDNFSKKIGKGSFGSVYYGKMKDGKEIAVKTMTDPSSHGNHQFVTEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHECSSQKQLDWIIRLRIAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGPEMNIVHWARSLIRKGDIISIMDPLLIGNVKTESIWRVAEIAMQCVEPHGASRPRMQEVILAIQDASKIEKGTESQMKVSSSGDSKPQSSRKTLLTSFLEIESPDLSNGCLPSAR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03297 930 SMART serkin_6 608 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03297 930 Gene3D Ribonuclease Inhibitor 367 527 IPR032675 -
Vivi3g03297 930 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 506 - -
Vivi3g03297 930 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Vivi3g03297 930 Gene3D Phosphorylase Kinase; domain 1 585 683 - -
Vivi3g03297 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Vivi3g03297 930 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 684 891 - -
Vivi3g03297 930 Gene3D Transferase(Phosphotransferase) domain 1 684 902 - -
Vivi3g03297 930 Pfam Malectin-like domain 28 362 IPR024788 -
Vivi3g03297 930 PANTHER OS07G0107800 PROTEIN-RELATED 26 881 - -
Vivi3g03297 930 SUPERFAMILY Protein kinase-like (PK-like) 594 875 IPR011009 -
Vivi3g03297 930 MobiDBLite consensus disorder prediction 886 909 - -
Vivi3g03297 930 ProSiteProfiles Protein kinase domain profile. 608 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03297 930 Pfam Protein tyrosine and serine/threonine kinase 610 875 IPR001245 GO:0004672|GO:0006468
Vivi3g03297 930 FunFam serine/threonine-protein kinase PBS1-like 585 683 - -
Vivi3g03297 930 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Vivi3g03297 930 SUPERFAMILY L domain-like 396 506 - -
Vivi3g03297 930 CDD STKc_IRAK 614 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03297 Vivi-Chr3 55810359 55816203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03297 10 930 Receptor kinase-like Gene Family AT1G67720 69.697 0.0 1296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vivi3g03297 Malectin_like 2.7e-86 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03297 - - gmx:100807148 1540.78