Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03289 ATGGATTATACACATTTCTTCCTAGTAGCAACAGCCACTCTAGGTTTCATCTCCATATCCAAATCTCTCTTCCATTTCCTCACCTGGCTATACGCCATCTTAATCCGCCCAACAAAGCATCTCAAACACTACGGTTCATGGGCCGTAATTACCGGCTCAACCGACGGGATCGGCAAATCCATGGCTCTAGAGTTGGCATCCAACGGACTCGACATTCTCTTACTTGGCCGAAACCCTCTCAAACTCGAAGCAACATCAAAAGAGATACTTAGTAAATTCAGAAACGTCGAAGTTAAGTGCCTTGTCGTAGACCTGCAGAACAATACCGGAGACGAAATAATGAGAAAAATTGAAGAAGCTATTGATGGTTTAGATGTTGGAATCCTAGTGAATGGCGCTGGTGTGGCCTATCCTTATGCAAGATATTTTCATGAAGTTGATTTGGATTTGATGGATTCTATCATTAAGGTTAACGTAGAAGGAGCAACTTTGGTTACAAAAGCTGTGATTCCTAGTATGATTAAGAAGAAGAAAGGGGCTGTTGTTAACATTGGTTCGGGTTCCACTGTTGTTCTTCCTTCTTATCCTCTTGTCACACTTTATGCAGCTTCAAAAGCGTATCTTGCAATGTTCTCTGCATGTACCAATTTGGAATACAAACATCAAGGAATTGACATCCAGTGTCAGATTCCGTTATTTGTGTCGACGAAAATGACAAGGATGAAGGCGTCTCTGTTTGTTCCAACACCGGATGTATATAGCAAAACATGCATGAAATGGATTGGTTATGAGAAACTGGTTGTGCCGTACTTTTTTCATTCTCTGCAGTCGTTTGTCATAAGGGCGATTCCTGATGTATTGTTGGATTCTTACATGCTCAGTTATTTTCTTTACTGGCGGAAAAGAGGACTTGTTAAGGACTCCAAAATCAAAGCATCTGCTAATTCTGAAGCAAACTAG 960 0.4115 MDYTHFFLVATATLGFISISKSLFHFLTWLYAILIRPTKHLKHYGSWAVITGSTDGIGKSMALELASNGLDILLLGRNPLKLEATSKEILSKFRNVEVKCLVVDLQNNTGDEIMRKIEEAIDGLDVGILVNGAGVAYPYARYFHEVDLDLMDSIIKVNVEGATLVTKAVIPSMIKKKKGAVVNIGSGSTVVLPSYPLVTLYAASKAYLAMFSACTNLEYKHQGIDIQCQIPLFVSTKMTRMKASLFVPTPDVYSKTCMKWIGYEKLVVPYFFHSLQSFVIRAIPDVLLDSYMLSYFLYWRKRGLVKDSKIKASANSEAN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03289 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 306 IPR036291 -
Vivi3g03289 319 PIRSF 11-beta-HSD1 1 306 - -
Vivi3g03289 319 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Vivi3g03289 319 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Vivi3g03289 319 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Vivi3g03289 319 PRINTS Glucose/ribitol dehydrogenase family signature 173 189 IPR002347 -
Vivi3g03289 319 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vivi3g03289 319 CDD 17beta-HSD1_like_SDR_c 45 284 - -
Vivi3g03289 319 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 268 - -
Vivi3g03289 319 PANTHER RH59310P 6 309 - -
Vivi3g03289 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vivi3g03289 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 IPR002347 -
Vivi3g03289 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Vivi3g03289 319 Gene3D - 40 269 - -
Vivi3g03289 319 Pfam short chain dehydrogenase 47 241 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03289 Vivi-Chr3 55601727 55603278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03289 14 308 Lipid Metabolism Gene Families AT1G67730 48.311 1.25e-108 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03289 K10251 - gmx:100816067 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03289 3 55601727 55603278 Vivi3g03289 3 55601727 55603278 ECH
Vivi5g05245 5 154164672 154167929 Vivi3g03289 3 55601727 55603278 PCT