Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03272 ATGGCAATTCCACTCACATTCATTCTACTCTTATTACTACTTCTTCTAGTACCTTCTTTCATTCAATCTTCTCCCATTCAAGATCCTGAATTAGTAGTCCAACAAGTACAAAAGAGTATTAATGATTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGAAGTGGCAATCCAATTGATGATTGTTGGAGATGTGACAAAAACTGGGAAACGAATCGCAAAAGTTTAGCAGATTGTGCCATTGGTTTTGGCAAACATGCAATTGGAGGAAGAGATGGTAAAATATATGTAGTAACAGACCCTGGTGATCACCCTGTGAAACCAAAGCCAGGAACATTACGCTACGGCGTTATTCAAGAAGAACCGTTATGGATAATCTTCAAACGCGACATGGTGATTAAGCTTAAGCAAGAGCTAATGATGAACTCGTTCAAGACCATTGATGGAAGAGGAACAAATGTGCACATTGCTGGTGGACCTTGTATAACTATACAATTCGTGACGAATATTATCGTTCATGGGATCAATGTGCATGATTGTAAGAGAGGTGGGAATACTTATGTGAGAGATTCACCTACACATTATGGTTTTAGAACACTTTCTGATGGGGATGGGATTTCGATTTTCGGTGGGAGTCATATCTGGGTTGATCATTGTTCTCTTTCGAATTGTCGCGATGGATTGATTGATGTTATTCATGGATCTACTGCTATTACTATTTCTAATAATTTTATGACTCATCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTTCACTAGAGATAAGAATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTAGTTCAGAGAATGCCAAGATGTAGACATGGATATTTTCATGTGGTGAACAATGATTATACACATTGGAGAATGTATGCTATAGGTGGAAGTGCTAATCCAACTATCAATAGTCAAGGGAATAGATTTCTTGCTTCCAATGACAATACCTTCAAAGAGGTGACGAAGCGTGAGAATGCGGGACAAAGCCAATGGAAGAATTGGAATTGGAGATCAAGTGGAGATTTGATGTTAAATGGTGCATTCTTTAGGGCATCAGGAGCAGGTTCATCATCAAGCTATGCAAGAGCATCAAGTTTAGCAGCAAAACCATCTTCTGTAGTTGCTTCCATCACTGCAGCAGCTGGAACATTAAACTGCAAAAAGGGTTCACGTTGCTGA 1212 0.3853 MAIPLTFILLLLLLLLVPSFIQSSPIQDPELVVQQVQKSINDSRRNLAFLSCGSGNPIDDCWRCDKNWETNRKSLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVKPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITIQFVTNIIVHGINVHDCKRGGNTYVRDSPTHYGFRTLSDGDGISIFGGSHIWVDHCSLSNCRDGLIDVIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSANPTINSQGNRFLASNDNTFKEVTKRENAGQSQWKNWNWRSSGDLMLNGAFFRASGAGSSSSYARASSLAAKPSSVVASITAAAGTLNCKKGSRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vivi3g03272 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vivi3g03272 403 SMART amb_all 129 326 IPR002022 -
Vivi3g03272 403 FunFam Pectate lyase 55 396 - -
Vivi3g03272 403 Gene3D - 55 396 IPR012334 -
Vivi3g03272 403 PANTHER PECTATE LYASE 18-RELATED 27 401 IPR045032 GO:0030570
Vivi3g03272 403 SUPERFAMILY Pectin lyase-like 41 397 IPR011050 -
Vivi3g03272 403 Pfam Pectate lyase 135 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03272 Vivi-Chr3 55401339 55403153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03272 5 403 Polysaccharide Lyase AT5G63180 75.248 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03272 K01728 - gmx:100816256 721.85