Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03261 ATGGGAGAAACCGGTATCAATGTTCCTTACCCACGAAACTTAAACCCTACGGCTCAAGAGTTTACCCCTACAACAACAAACCCCATTCCCCTCTCCGTCGCCGTCGGAGTTCCCTATCCCTACCCTCACTTCGCCGTCACACCTCCGCCGCATCTCTCCACCTTACCCACCCGCTCCGTCCTCCTCAGTCCCGTCCCTCCCACTACTGAATCCGACCTCCGGAAAGATCTCCAGGCCTTCGGTGAAGTCAGAGCTATCCAAACGGACTCCTTCCGTTACGGTATCGTGACGGCACATTTCTATGACCTCAGACACGCACAGGCGGCGTTCACCGCCATTCGTACTCACCATGTCCACTGCGTTTCGTTTTTTAACCCAATGTCTCAGCCCCAATTTCATCCCGCTCCACCTCCTCCCCCGCCGGGGCTCGTAGCCGGTGTGCCACTCTGGGCTCACTATGTTTTCTCCGATATTCAGAATCAAGGAACCCTCGTCGTTTTCAACTTAGACGACGACGTTTCACCTGAAAAACTACGACAAGTTTTCGAGCCTTTTGGAGCCATAAAGGAAGTGAGGGAAATTCCAGGGAAGAAAAAGAGTCAAAGATTCGTCGAGTTTTTCGACATAAGAGATGCTGGCAAAGCCTTGAAAGAAATGAATGGAAAAGAAATCGAAGGAAAATCAATTGCTATTGAGTTTAGTAAACAAAGTGGTTATTATGGAAGAAGATTCTTCCATTCAAGTAATCCAAATCCTAATCCTAATACCTATATCTCCAATAAGCCATTTCATTTCAACTTTCCTCCTCCACCTCCCTCGCCCCGACGTCGTTTTGGCCCACCGCAATTCTCGCACAAGAATTTCGGGACTGGTTCAATGAGTTCGAATAGTTTGAATGGGGATGAAAATCATTTTTCCCCTAGGAGGAATTTTGGTAGGGAATTCATTGGAGAAAGACCATGGAATTGGAAGGGGAAGCAACCTTATAAGAATGAGACTCGTTATATTATCAAAGAAGATGCCATTGTTGAATCCGATTCTAGAACTACTCTCATGATCAAAAACATACCCAACAAGTACAGTCAGAAGCTACTCTTGAACATGTTGGACAACCACTGTTTACGCTGCAACGAGCAGATAGGCGACGGCGATGACAAGCCTCTATCTTCCTATGACTTCGTATACCTTCCTATAGATTTCAAGAACAAGTGCAACGTTGGATACGGGTTCGTGAATATGACATCTCCGGAAGCTACTCTAAGGTTCTACAAGGCCTTCCAGCAACAACGTTGGGAGGTTTTTAACTCCAGAAAAATCTGTCATCTTACCTACGCTAGAGTTCAGGGTTTGGAAGCTTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCGTGTGAGATGGAGCATTATCTGCCGGTCGTATTTTCACCGCCTCGAGATGGGAAGCAATTAACGGAGCCATTTCCAGTAGTGGGGAGCATGGTACGAATGGGTGCTGTAGATGATAAGATGGAGGGTCGAGATCATAGGGTGGTAGCAGGTAGTAGTGGTGGCGGTGATGATGATGATGATGATAAATTAGATGTGAAGTGA 1590 0.466 MGETGINVPYPRNLNPTAQEFTPTTTNPIPLSVAVGVPYPYPHFAVTPPPHLSTLPTRSVLLSPVPPTTESDLRKDLQAFGEVRAIQTDSFRYGIVTAHFYDLRHAQAAFTAIRTHHVHCVSFFNPMSQPQFHPAPPPPPPGLVAGVPLWAHYVFSDIQNQGTLVVFNLDDDVSPEKLRQVFEPFGAIKEVREIPGKKKSQRFVEFFDIRDAGKALKEMNGKEIEGKSIAIEFSKQSGYYGRRFFHSSNPNPNPNTYISNKPFHFNFPPPPPSPRRRFGPPQFSHKNFGTGSMSSNSLNGDENHFSPRRNFGREFIGERPWNWKGKQPYKNETRYIIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCLRCNEQIGDGDDKPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRFYKAFQQQRWEVFNSRKICHLTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKQLTEPFPVVGSMVRMGAVDDKMEGRDHRVVAGSSGGGDDDDDDKLDVK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03261 529 PANTHER RNA RECOGNITION MOTIF-CONTAINING 339 471 - -
Vivi3g03261 529 Gene3D - 156 236 IPR012677 -
Vivi3g03261 529 SMART rrm1_1 59 124 IPR000504 GO:0003723
Vivi3g03261 529 SMART rrm1_1 163 232 IPR000504 GO:0003723
Vivi3g03261 529 Pfam RNA recognition motif 2 348 458 IPR007201 -
Vivi3g03261 529 SUPERFAMILY RNA-binding domain, RBD 157 250 IPR035979 GO:0003676
Vivi3g03261 529 FunFam Terminal EAR1-like 1 301 454 - -
Vivi3g03261 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 229 IPR000504 GO:0003723
Vivi3g03261 529 MobiDBLite consensus disorder prediction 502 529 - -
Vivi3g03261 529 CDD RRM3_EAR1_like 348 449 IPR034458 -
Vivi3g03261 529 SUPERFAMILY RNA-binding domain, RBD 350 446 IPR035979 GO:0003676
Vivi3g03261 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 236 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03261 Vivi-Chr3 55269619 55272444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03261 164 236 Eukaryotic Initiation Factors Gene Family AT2G23350 40.789 3.43e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03261 - - psat:127082995 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03261 3 55269619 55272444 Vivi3g03261 3 55269619 55272444 ECH