Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03254 ATGGATTACGCTACAGAATTTTCCATGGATCGTCGTCCTCGAAAAAGAGCTAAATTGGCTTGGGAACTTCCTCAAACCCACTCAAAGGCTCATTCGGGGATGTATTATGGACAAGAGTTTGCTAATGTGACAACAAGCTATGGGACGTTGAGGGTACTTCCTGACCAAGGTGGTCTGTCGATAAAAGGATTGGCGGAAAAAGGTTCTCCTCAATGGCGAGAGGATGATAAAGATGGACATTACATGTTTGCGCTTGGGGAAAATTTAACTTCTCGGTATAAGATCCTCAGGAAAATCGGTGAAGGGACTTTTGGTCAGGTTTTGGAATGCTGGGACAGAGAAATGAGGGAGGTAGTTGCTATAAAAGTTGTGAGGAGTATAAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTGCTCCAGTTGCTTGGGAAGTATGACAGGAATGGCAATCGCTGTGTTCAAATACGCAACTGGTTTGACTACCGGAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTCCGGAAGAACAATTATCGCCCGTTTCCGGTTGATCTTGTCCGCGAGCTAGGAAGACAATTGTTGGAAAGTGTAGCTTTTGTACATGATATGCGCCTCATCCACACTGACTTGAAGCCTGAGAATATACTTTTTATTTCCGCAGAATATGTAAAAGTGCCTGACTACAAGGTCATGTTCCGGTCGCCAAAAGAGGGAGCCTCTTATAAAAGACTGCCAAAATCAAGTGCTATTAAGGTTATTGATTTTGGTAGTACTGCTTATGAGCACCAAGATCACAACTATATCGTCTCTACTAGGCATTATAGGGCCCCTGAGGTTATTCTTGGACTTGGTTGGGGTTTTCCTTGTGACATATGGAGTATTGGTTGCATTTTGGTTGAGTTGTGCTCGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTAGAGCATCTAGCTATGATGGAGAGGGTTTTAGGCCCAATGCCTCAGGACATGTTGAAAAGAGCAGACCGCCCCGCAGAGAAGTATGTCAGAAGAGGTAGACTTAACTGGCCCGAAGGAGCAGTCTCCCGAGAAAGCATCAAAGCTGTCTTGAAACTACCCCGTCTTCCTAATCTGGTGATGCAGCATGTGGATCACTCGGCTGGGGATCTTCTTGATCTTTTGCAGGGTCTACTTCGGTTTGACCCCATGAGCAGGATGAAGGCTCATGAAGCACTCAGGCATCCCTTTTTTACTGGGGGGCATTACCAGAGGTATTAA 1287 0.4452 MDYATEFSMDRRPRKRAKLAWELPQTHSKAHSGMYYGQEFANVTTSYGTLRVLPDQGGLSIKGLAEKGSPQWREDDKDGHYMFALGENLTSRYKILRKIGEGTFGQVLECWDREMREVVAIKVVRSIKKYREAAMLEVDVLQLLGKYDRNGNRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLESVAFVHDMRLIHTDLKPENILFISAEYVKVPDYKVMFRSPKEGASYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWGFPCDIWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPMPQDMLKRADRPAEKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLRFDPMSRMKAHEALRHPFFTGGHYQRY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03254 428 SUPERFAMILY Protein kinase-like (PK-like) 80 424 IPR011009 -
Vivi3g03254 428 CDD PKc_CLK 80 420 - -
Vivi3g03254 428 FunFam Serine/threonine-protein kinase AFC2 169 420 - -
Vivi3g03254 428 Pfam Protein kinase domain 93 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03254 428 ProSitePatterns Protein kinases ATP-binding region signature. 99 129 IPR017441 GO:0005524
Vivi3g03254 428 ProSiteProfiles Protein kinase domain profile. 93 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03254 428 SMART serkin_6 93 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03254 428 Gene3D Transferase(Phosphotransferase) domain 1 147 420 - -
Vivi3g03254 428 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
Vivi3g03254 428 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 8 422 - -
Vivi3g03254 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03254 Vivi-Chr3 55186862 55190675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03254 93 420 Core Cell Cycle Gene Families AT1G76540 25.369 3.44e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g03254 Pkinase 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03254 K08287 - qsa:O6P43_023145 749.199