Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03252 ATGTTAGGAGAAGAAGAAAAAGAGATGAAACCACCCTCCATCAGGAGAACCTATTCACGTTCAGCTTCATGGACAGATCGTTCTCCAAACAGCCGTAAACCACCGCGACCAAGCTTGCCACCTCTTCAACCTCTTTCTATCAATAAACGTAGCGTTGAGGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCGCTTCCACAGACTCCGAGAGGTTCCATCGCAACGAATGAACCTGTGCAGGATTTTCAGTTTAAAAGAGATAAATTGGCTTTCTTTGACAAAGAGTGTTCTAGAATTGCTGAACATATTTACTTAGGAAGTGACACGGTGGCGAAAAACCATGAGCTTCTTAGACAGAAAGGAATAACACATGTGCTTAACTGTGTTGGATTTGTTTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCTACGGAGGATATAACATGTGTTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGTGGTCGTGTTCTTGTTCATTGCTGTCAAGGGGTTTCTCGATCGACGGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGGAGTCACAAATCCTAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAATTCTATTCTAAGGATGTATCGAATGGCTCCTCACTCTCCGTATGATCCTCTACATCTTGTTCCTAAGATGGTTAACCAACCAGGTTCACTAGCACTTGATTCTCGCGGCGCTTTCATTGTTCATGTTCCTTCAGCTATTTATGTTTGGATTGGAAAAAATTGTAACTTGTTCATGTCTTGCAATGCAAAGAGTGCGGCTTTTCAGGTTGTGCGCTATGAAAGGGCAAATGGTCCGATTCTGAGCATCCGTGAAGATCAAGAATCAACTGAGTTTTGGGCTGCTCTTTCTGATGAACAACGTGTGTCAGGTGATTCTGATAAACAACTGGTTTTGCCTACTGAAAAGAAAGAGATTGGTCTAAGAAAAGTCGATGCATATGATTTGGATTTCGAGATTTTTCATAAGGCAATTTCTGGTGGGGTTGTTCCGCCTTTTTCTGAAACTAGTGCTGGATCGGAAACTTGTCTTCCTGCTAGAGAACATGGCTGGGCAAGATTGAGGCGGAAGTTTGCTAGTGGTGTGATGAAAGAAATCTTAACATCTCCTAAATGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATCCCTTGTCAGCGTCACCATCATCAAATCATCCCAGTGACTGTGGCTCCCCAGATTCCTTTGAATGCTATCTAACCAGCTTGGACAGAGGAAAAGATACTGTTGAAGCCATGGACTTGTCTGAATCTGATCCTGGTGTTTCTTCTTTGCCGCCACTATCTCCCTGTGGCGGTTATTTTCCTTGTGGTTTTCTATGCAGCAGCCCGAAATTCAATTCCAAGTCGCCAACACTTTCGCCTTCAAGTTCTGATTACGCAAGTTCATTTACATTTTCGCCGTCCTCTACCAATTGGTCAGACTTGTCATTTGTGTCTTCTCAGCAGCCATCACCATCTGGCCAGGAATCAATTGAACCTTTGTATGTTAAAGATCTGTCTTTCTCAACGAGTTCCTCTTTACTTAACAAAGAAGTTCTTCTATCTTCACCTTCAGAGTCATTTTCAACTGATCACACCTTGGGAGGGGAAAACTCGTATTTGCCATCAAAAGGATCTTTTCTCTCTATTGCACAGCGTAGAGGGAGTAATATACCGCCTCGGATGTTGCTACCCTCTGTCAATGAATCCTCTAAAGTCCATAAGAACCTGGTAAGATCACAGTCATTCCATTTGCCTGACTTAGATGTTAAGAAAGATGATAGTTACAATAAATCTGATCATGAAAACAGTAGGAAATGGCTAATAGCAGATAACGATATCATTAGGTCAGCTGTTAAACAGCAGAGTGAGATTAGTAATAAAGAAGATCATGGTATCATGTTATGTAATAAGATGGCTGAGCTTGAAGTAGAGGAGAAATGA 2142 0.4183 MLGEEEKEMKPPSIRRTYSRSASWTDRSPNSRKPPRPSLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIATNEPVQDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCVLYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYERANGPILSIREDQESTEFWAALSDEQRVSGDSDKQLVLPTEKKEIGLRKVDAYDLDFEIFHKAISGGVVPPFSETSAGSETCLPAREHGWARLRRKFASGVMKEILTSPKWKCDVIMEEEKQDFVADDDPLSASPSSNHPSDCGSPDSFECYLTSLDRGKDTVEAMDLSESDPGVSSLPPLSPCGGYFPCGFLCSSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSQQPSPSGQESIEPLYVKDLSFSTSSSLLNKEVLLSSPSESFSTDHTLGGENSYLPSKGSFLSIAQRRGSNIPPRMLLPSVNESSKVHKNLVRSQSFHLPDLDVKKDDSYNKSDHENSRKWLIADNDIIRSAVKQQSEISNKEDHGIMLCNKMAELEVEEK 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03252 713 ProSiteProfiles Dual specificity protein phosphatase domain profile. 98 240 IPR020422 GO:0006470|GO:0008138
Vivi3g03252 713 MobiDBLite consensus disorder prediction 1 47 - -
Vivi3g03252 713 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 240 IPR029021 -
Vivi3g03252 713 PANTHER MKPA PROTEIN 18 664 - -
Vivi3g03252 713 SMART dsp_5 98 237 IPR020422 GO:0006470|GO:0008138
Vivi3g03252 713 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 164 218 IPR000387 GO:0016311|GO:0016791
Vivi3g03252 713 SUPERFAMILY Actin depolymerizing proteins 244 348 - -
Vivi3g03252 713 ProSitePatterns Tyrosine specific protein phosphatases active site. 182 192 IPR016130 GO:0016311|GO:0016791
Vivi3g03252 713 CDD DSP 99 233 - -
Vivi3g03252 713 Gene3D Severin 251 348 IPR029006 -
Vivi3g03252 713 Pfam Dual specificity phosphatase, catalytic domain 106 236 IPR000340 GO:0008138|GO:0016311
Vivi3g03252 713 MobiDBLite consensus disorder prediction 16 32 - -
Vivi3g03252 713 Gene3D Protein tyrosine phosphatase superfamily 77 240 IPR029021 -
Vivi3g03252 713 MobiDBLite consensus disorder prediction 446 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03252 Vivi-Chr3 55151221 55154434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03252 3 134 Protein tyrosine phosphatase (PTP) family AT3G55270 47.297 3.38e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03252 - - lja:Lj6g3v0574850.1 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05177 5 152914436 152916751 Vivi3g03252 3 55151221 55154434 PCT