LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g03251	ATGTTAGGAGAAGAAGAAAAAGAGATGAAACCACCCTCCATCAGGAGAACCTATTCACGTTCAGCTTCATGGACAGATCGTTCTCCAAACAGCCGTAAACCACCGCGACCAAGCTTGCCACCTCTTCAACCTCTTTCTATCAATAAACGTAGCGTTGAGGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCGCTTCCACAGACTCCGAGAGGTTCCATCGCAACGAATGAACCTGTGCAGGATTTTCAGTTTAAAAGAGATAAATTGGCTTTCTTTGACAAAGAGTGTTCTAGAATTGCTGAACATATTTACTTAGGAAGTGACACGGTGGCGAAAAACCATGAGCTTCTTAGACAGAAAGGAATAACACATGTGCTTAACTGTGTTGGATTTGTTTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCTACGGAGGATATAACATGTGTTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGTGGTCGTGTTCTTGTTCATTGCTGTCAAGGGGTTTCTCGATCGACGGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGGAGTCACAAATCCTAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAATTCTATTCTAAGGATGTATCGAATGGCTCCTCACTCTCCGTATGATCCTCTACATCTTGTTCCTAAGATGGTTAACCAACCAGGTTCACTAGCACTTGATTCTCGCGGCGCTTTCATTGTTCATGTTCCTTCAGCTATTTATGTTTGGATTGGAAAAAATTGTAACTTGTTCATGTCTTGCAATGCAAAGAGTGCGGCTTTTCAGGTTGTGCGCTATGAAAGGGCAAATGGTCCGATTCTGAGCATCCGTGAAGATCAAGAATCAACTGAGTTTTGGGCTGCTCTTTCTGATGAACAACGTGTGTCAGGTGATTCTGATAAACAACTGGTTTTGCCTACTGAAAAGAAAGAGATTGGTCTAAGAAAAGTCGATGCATATGATTTGGATTTCGAGATTTTTCATAAGGCAATTTCTGGTGGGGTTGTTCCGCCTTTTTCTGAAACTAGTGCTGGATCGGAAACTTGTCTTCCTGCTAGAGAACATGGCTGGGCAAGATTGAGGCGGAAGTTTGCTAGTGGTGTGATGAAAGAAATCTTAACATCTCCTAAATGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATCCCTTGTCAGCGTCACCATCATCAAATCATCCCAGTGACTGTGGCTCCCCAGATTCCTTTGAATGCTATCTAACCAGCTTGGACAGAGGAAAAGATACTGTTGAAGCCATGGACTTGTCTGAATCTGATCCTGGTGTTTCTTCTTTGCCGCCACTATCTCCCTGTGGCGGTTATTTTCCTTGTGGTTTTCTATGCAGCAGCCCGAAATTCAATTCCAAGTCGCCAACACTTTCGCCTTCAAGTTCTGATTACGCAAGTTCATTTACATTTTCGCCGTCCTCTACCAATTGGTCAGACTTGTCATTTGTGTCTTCTCAGCAGCCATCACCATCTGGCCAGGAATCAATTGAACCTTTGTATGTTAAAGATCTGTCTTTCTCAACGAGTTCCTCTTTACTTAACAAAGAAGTTCTTCTATCTTCACCTTCAGAGTCATTTTCAACTGATCACACCTTGGGAGGGGAAAACTCGTATTTGCCATCAAAAGGATCTTTTCTCTCTATTGCACAGCGTAGAGGGAGTAATATACCGCCTCGGATGTTGCTACCCTCTGTCAATGAATCCTCTAAAGTCCATAAGAACCTGGAGGAATACACCTACTAA	1947	0.4263	MLGEEEKEMKPPSIRRTYSRSASWTDRSPNSRKPPRPSLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIATNEPVQDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCVLYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYERANGPILSIREDQESTEFWAALSDEQRVSGDSDKQLVLPTEKKEIGLRKVDAYDLDFEIFHKAISGGVVPPFSETSAGSETCLPAREHGWARLRRKFASGVMKEILTSPKWKCDVIMEEEKQDFVADDDPLSASPSSNHPSDCGSPDSFECYLTSLDRGKDTVEAMDLSESDPGVSSLPPLSPCGGYFPCGFLCSSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSQQPSPSGQESIEPLYVKDLSFSTSSSLLNKEVLLSSPSESFSTDHTLGGENSYLPSKGSFLSIAQRRGSNIPPRMLLPSVNESSKVHKNLEEYTY	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g03251	648	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	88	240	IPR029021	-
	Vivi3g03251	648	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	98	240	IPR020422	GO:0006470\|GO:0008138
	Vivi3g03251	648	MobiDBLite	consensus disorder prediction	1	47	-	-
	Vivi3g03251	648	Gene3D	Protein tyrosine phosphatase superfamily	77	240	IPR029021	-
	Vivi3g03251	648	SMART	dsp_5	98	237	IPR020422	GO:0006470\|GO:0008138
	Vivi3g03251	648	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	164	218	IPR000387	GO:0016311\|GO:0016791
	Vivi3g03251	648	Pfam	Dual specificity phosphatase, catalytic domain	106	236	IPR000340	GO:0008138\|GO:0016311
	Vivi3g03251	648	ProSitePatterns	Tyrosine specific protein phosphatases active site.	182	192	IPR016130	GO:0016311\|GO:0016791
	Vivi3g03251	648	CDD	DSP	99	233	-	-
	Vivi3g03251	648	SUPERFAMILY	Actin depolymerizing proteins	244	348	-	-
	Vivi3g03251	648	Gene3D	Severin	251	348	IPR029006	-
	Vivi3g03251	648	MobiDBLite	consensus disorder prediction	16	32	-	-
	Vivi3g03251	648	PANTHER	MKPA PROTEIN	18	642	-	-
	Vivi3g03251	648	MobiDBLite	consensus disorder prediction	446	465	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g03251	Vivi-Chr3	55150627	55154434	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g03251	3	134	Protein tyrosine phosphatase (PTP) family	AT3G55270	47.297	1.93e-30	125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g03251	-		-	lja:Lj6g3v0574850.1	896.345