Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03238 ATGGGACTTTCAAACTTTCCCTATGCAGCAGAAGGTGTTATGCCTGTGATTGTGATGAACACAGTTTTATCTGTGGTTTTATTGAAGAACATGTTTAGATCGATTCTCCAAGTAGTTGGTTGCACATCAAGTACTATTACTAATTCATCAAATCTTGAAGAAGAAGAAGAAGAACTCTACTATCAAGAGAATAGTAGTTCGAGGGAAAGTAGGGTGTCAATAACACAGTACAAGTCATTGTGTTACAACAGGTCCAACGTAGGTAGAAGTCATATGGTAGAGTGTTGTGTGTGTTTGTCTGGTTTTGAAGCAAATCAGGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTTCATAGAGGTTGTTTAGAGAAATGGTTTGATAATAAACATAGTTCATGTCCTTTATGTCGTTCTATGGAATAG 423 0.3735 MGLSNFPYAAEGVMPVIVMNTVLSVVLLKNMFRSILQVVGCTSSTITNSSNLEEEEEELYYQENSSSRESRVSITQYKSLCYNRSNVGRSHMVECCVCLSGFEANQEVSELPCKHFFHRGCLEKWFDNKHSSCPLCRSME 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03238 140 SMART ringv_2 94 137 IPR011016 GO:0008270
Vivi3g03238 140 SMART ring_2 95 136 IPR001841 -
Vivi3g03238 140 SUPERFAMILY RING/U-box 94 138 - -
Vivi3g03238 140 Pfam Ring finger domain 94 137 IPR001841 -
Vivi3g03238 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 140 IPR013083 -
Vivi3g03238 140 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Vivi3g03238 140 PANTHER - 1 139 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03238 Vivi-Chr3 54908341 54908995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03238 1 138 C3H Transcription Factor Family AT2G04240 33.766 5.28e-23 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03238 K16285 - gmx:100811790 177.178