Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03218 ATGAAGAGACTCACCACCTCAGATTCTTCTTCTCCTCTCATCACAATCTCTCCATCAACAGAAGAACATAGTCCGAGGAACAAACATGTGTATGGTATGGAGTTTCAATCCATGATGTTGGATGGATTCGAAGAGGAAGTTTGTGTTGAAGAAACGGGTCATCACTCTGAGAAAAAGCGTCGACTAAGAGTGGATCAAGTTAAGGCCCTTGAGAAAAACTTTGAAGTGGAAAACAAGCTTGAGCCTGAGAGAAAGGAGAAGCTTGCCGTAGAACTTGGGTTGCAGCCTAGACAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACAAAACAGTTGGAAAGAGATTACGGTGTTCTTAAGGCTAATTATGATGCTCTTAAGCTCAAGTTAGATGCAATTACTCAAGACAACAAAGCTTTTCATAAAGAGATTAAGGAACTGAAATTGAAGCTGGAAGAAGAAGAAAAAAGTGCAAGTAGTGTTTTGGTGAAGGAGGAGATGATAACAATGCCCGAATCTGATGAAAACAAGCATAACCCGTCTTCGGAAACATCGATTCCTAGTTTAGAATCTAAGGATCATTTGAATTATGACAGCATGATCAACAACAACAATGATTTTGGTGTTGGAGAAGCTTCTTCACTCTTTCCAGCAGACTTGAGAGACGGTTCATCTGACAGTGATTCTAGCACAATTTCTTCATCCGGAGGAATTCTTCAAAGTCATCTTTTGTTGTCTCCTGATTCATCCTCCATGAATTGTTTTCAATACCAGAAATCTTATCATGTGAAAATGGAGGAACACAATTTCTTGAGTGCAGATGAGGCGTGCAATTTTTTCTCAGACGACCAAGCACCAACGTTGCAATGGTACTGTCCAGATCAGTGGAGTTGA 903 0.4053 MKRLTTSDSSSPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEVCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAVELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKLDAITQDNKAFHKEIKELKLKLEEEEKSASSVLVKEEMITMPESDENKHNPSSETSIPSLESKDHLNYDSMINNNNDFGVGEASSLFPADLRDGSSDSDSSTISSSGGILQSHLLLSPDSSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDDQAPTLQWYCPDQWS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03218 300 SMART HOX_1 56 117 IPR001356 GO:0003677
Vivi3g03218 300 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Vivi3g03218 300 Gene3D - 52 120 - -
Vivi3g03218 300 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Vivi3g03218 300 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Vivi3g03218 300 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g03218 300 FunFam homeobox-leucine zipper protein ATHB-6-like 61 107 - -
Vivi3g03218 300 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vivi3g03218 300 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Vivi3g03218 300 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g03218 300 CDD homeodomain 58 114 IPR001356 GO:0003677
Vivi3g03218 300 SUPERFAMILY Homeodomain-like 48 115 IPR009057 -
Vivi3g03218 300 Coils Coil 112 167 - -
Vivi3g03218 300 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vivi3g03218 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 272 IPR045224 GO:0003700
Vivi3g03218 300 MobiDBLite consensus disorder prediction 169 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03218 Vivi-Chr3 54642111 54643878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03218 1 300 Homeobox Transcription Factor Family AT4G40060 45.833 3.33e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi3g03218 Homeodomain 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03218 K09338 - gmx:100777924 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05158 5 152549462 152551859 Vivi3g03218 3 54642111 54643878 PCT