Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03217 ATGAAGAGACTCACCACCTCAGATTCTTCTTCTCCTCTCATCACAATCTCTCCATCAACAGAACATAGTCCGAGGAACAAACATGTGTATGGTATGGAGTTTCAATCCATGATGTTGGATGGATTCGAAGAGGAAGTTTGTGTTGAAGAAACGGGTCATCACTCTGAGAAAAAGCGTCGACTAAGAGTGGATCAAGTTAAGGCCCTTGAGAAAAACTTTGAAGTGGAAAACAAGCTTGAGCCTGAGAGAAAGGAGAAGCTTGCCGTAGAACTTGGGTTGCAGCCTAGACAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACAAAACAGTTGGAAAGAGATTACGGTGTTCTTAAGGCTAATTATGATGCTCTTAAGCTCAAGTTAGATGCAATTACTCAAGACAACAAAGCTTTTCATAAAGAGATTAAGGAACTGAAATTGAAGCTGGAAGAAGAAGAAAAAAGTGCAAGTAGTGTTTTGGTGAAGGAGGAGATGATAACAATGCCCGAATCTGATGAAAACAAGCATAACCCGTCTTCGGAAACATCGATTCCTAGTTTAGAATCTAAGGATCATTTGAATTATGACAGCATGATCAACAACAACAATGATTTTGGTGTTGGAGAAGCTTCTTCACTCTTTCCAGCAGACTTGAGAGACGGTTCATCTGACAGTGATTCTAGCACAATTTCTTCATCCGGAGGAATTCTTCAAAGTCATCTTTTGTTGTCTCCTGATTCATCCTCCATGAATTGTTTTCAATACCAGAAATCTTATCATGTGAAAATGGAGGAACACAATTTCTTGAGTGCAGATGAGGCGTGCAATTTTTTCTCAGACGACCAAGCACCAACGTTGCAATGGTACTGTCCAGATCAGTGGAGTTGA 900 0.4056 MKRLTTSDSSSPLITISPSTEHSPRNKHVYGMEFQSMMLDGFEEEVCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAVELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKLDAITQDNKAFHKEIKELKLKLEEEEKSASSVLVKEEMITMPESDENKHNPSSETSIPSLESKDHLNYDSMINNNNDFGVGEASSLFPADLRDGSSDSDSSTISSSGGILQSHLLLSPDSSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDDQAPTLQWYCPDQWS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03217 299 SUPERFAMILY Homeodomain-like 47 114 IPR009057 -
Vivi3g03217 299 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vivi3g03217 299 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vivi3g03217 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 271 IPR045224 GO:0003700
Vivi3g03217 299 SMART HOX_1 55 116 IPR001356 GO:0003677
Vivi3g03217 299 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g03217 299 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vivi3g03217 299 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g03217 299 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vivi3g03217 299 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vivi3g03217 299 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Vivi3g03217 299 Gene3D - 51 119 - -
Vivi3g03217 299 CDD homeodomain 57 113 IPR001356 GO:0003677
Vivi3g03217 299 Coils Coil 111 166 - -
Vivi3g03217 299 FunFam homeobox-leucine zipper protein ATHB-6-like 60 106 - -
Vivi3g03217 299 MobiDBLite consensus disorder prediction 168 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03217 Vivi-Chr3 54642111 54643879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03217 1 299 Homeobox Transcription Factor Family AT4G40060 45.338 3.93e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi3g03217 Homeodomain 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03217 K09338 - gmx:100777924 342.043