Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03216 ATGACGATTGGAGATCATAGAAAGAACGATATTGGCCTTGGAGATCAGTTTCCTATTGGAATGCGTGTTCTTGTAGTTGAAGCTGATTTAACATGTCTCAAGAATTTAGAGGAACTTCTCAAAAAGTGTCAATATCATGTAACCACTGCTCAAAATGGAATAACAGCGCTGAACTTGTTGAGAGAAAACAAAAATAATTTCGATCTATTAATGACTAATGCTGATATGCCAAACATGGATGGATTCAAGCTGCTTGAGCTTGTTGGAATGCACCTACCTGTAATTTTGTTTTCTTCGAATGATGATCCGAAGATGGTGATGAGAGGAGTTTTGCATGGTGCTTGTGATTATCTTGTGAACCCTTTTAGAATGGAAAAACTACAGGTCATTTGGCAACATGTAATCAGAAAGAATATGAATATCAAAAGAAGTAATTATGATACGATTAATTCGGATAGAAAAATTGGAGTTGATTCGACAATGGTAACAAATTCAGATCAAAATGAAAAGCTATCAGAAAAAAGGAAAAATCATAGAGAAGATGATGTTAATAAGAATCAGAATCCCACAACTTTGAAGAAGAAGCCTCGAGTTGTTTGGTCGAATGACTTACACCGCAAGTTTGTCGATGTCGTGAATAAAATAGGCCTTGATAATGCTGTGCCGAAAAAGATTCTTGAGTTAATGAAAGATGAAAATCTTACAAACAAGAATGTGGCCAGCCATCTCCAGAAATATAGACTCACTCTAAAAAGAATTAAAAGTGAGGAAATCCAACAAGCTAATATGGTGGCAGCAAAACGTAGAAGTTCAAATACATCCTATTCAAGAAGAAGTACTCAACTTAGTGAAGTTGGAGATTATTTGCATAAATTGAATGACTCTAAAGAGATTAATAGGCATAACAATCTCATGATGGTGGAATCAAATCCTCAAGAGAAAAGCTTAGTCGTCTCTCAACCATCATTATTTTCTATCCCTTCACTTGAAAACAAAAATATTTTGTCAAGCACTATGGAATTACCTGCAACAAACTCTAACCTTCCATTAATAGACTATACAGTTCCTCTGAATGTTATTGAACCTGAAGGAAACTTGGATTACAATTATTGGAAACACGTTCAAATGAACTCTGATGAGATTCCATAG 1149 0.349 MTIGDHRKNDIGLGDQFPIGMRVLVVEADLTCLKNLEELLKKCQYHVTTAQNGITALNLLRENKNNFDLLMTNADMPNMDGFKLLELVGMHLPVILFSSNDDPKMVMRGVLHGACDYLVNPFRMEKLQVIWQHVIRKNMNIKRSNYDTINSDRKIGVDSTMVTNSDQNEKLSEKRKNHREDDVNKNQNPTTLKKKPRVVWSNDLHRKFVDVVNKIGLDNAVPKKILELMKDENLTNKNVASHLQKYRLTLKRIKSEEIQQANMVAAKRRSSNTSYSRRSTQLSEVGDYLHKLNDSKEINRHNNLMMVESNPQEKSLVVSQPSLFSIPSLENKNILSSTMELPATNSNLPLIDYTVPLNVIEPEGNLDYNYWKHVQMNSDEIP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03216 382 Gene3D - 191 254 - -
Vivi3g03216 382 MobiDBLite consensus disorder prediction 168 188 - -
Vivi3g03216 382 FunFam Two-component response regulator 191 254 - -
Vivi3g03216 382 SUPERFAMILY CheY-like 20 142 IPR011006 -
Vivi3g03216 382 SUPERFAMILY Homeodomain-like 193 252 IPR009057 -
Vivi3g03216 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 251 IPR017930 -
Vivi3g03216 382 Pfam Response regulator receiver domain 23 128 IPR001789 GO:0000160
Vivi3g03216 382 SMART REC_2 21 131 IPR001789 GO:0000160
Vivi3g03216 382 MobiDBLite consensus disorder prediction 158 193 - -
Vivi3g03216 382 ProSiteProfiles Response regulatory domain profile. 22 135 IPR001789 GO:0000160
Vivi3g03216 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 281 IPR045279 GO:0009736
Vivi3g03216 382 Pfam Myb-like DNA-binding domain 197 247 IPR001005 -
Vivi3g03216 382 CDD REC_typeB_ARR-like 23 135 - -
Vivi3g03216 382 Gene3D - 20 155 - -
Vivi3g03216 382 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03216 Vivi-Chr3 54613639 54616236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03216 15 264 Response Regulator Gene Family AT2G25180 55.078 4.00e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi3g03216 Response_reg 4.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03216 - K14491 vvo:131658075 752.666