Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03196 ATGGCGGTTACACCTTTTGGTAATACTTCAGCTACTCAATGGGGAATTCGTCCTCAGCTTATCGCCAGATCCAGCACTGTGCCCAAGTTTGCTTCGGCAAGCCAGAATGCTACAAGCAAGGTAAACTTTATGGCTGCCTCAAGTTCAACCTTTTTTGCTCGGGATTCCTTGCGTTTTAGCATAGGCTCATATCAAACTTTGCATCGTCGAAGGGGATCAAGGTTTATAGTTAGAGCTGAAACAGATTACTACACTGTCCTTGGGGTGTCAAGAAATTCTACCAAATCTGAAATTAAGACTGCTTATCGTAAGCTAGCCCGGAATTATCATCCAGATGTGAACAAGGAGCCCGGTGCAGAAGACAAATTTAAGGAAATTAGTAATGCATATGAGGTCTTATCAGATGATGAAAAACGATCCATATATGACAAATATGGAGAGGCAGGGCTTAAGGGTCAAGGAATGGGCGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGACGCTATTTGAGGGCATGGGTGGTGGTGGCATGGGCAGCAGAGGTTCTTGGAATGGAGCAGTGGATGGCGAAGATGAGTATTACAGTCTTCTTTTGAATTTCAAAGAAGCCGTTTTCGGAGTGGAAAAGGAGATAGAGATAAGGCGACTTGAGAATTGTGGAACTTGCGATGGTTCAGGGGCCAAACCAGGGACTAAATCATCCACATGTAAAACGTGTGGTGGTCAGGGTCGTGTTGTCACTCAGACAAGGACTCCGTTAGGTATCTTTCAGCAGTCTATGACTTGCTCATCTTGCAATGGGACTGGAGAAACCCGCACACCTTGCGGTACATGTTCTGGGGATGGTCGGGTTAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCGGCCGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAACGAAGGTAACACTGGAAGGCGCGGTGGTTCTCCCGGTGACCTCTTTGTTGTTCTTGAAGTTATTCCAGATCCCGTGCTGAAACGAGAAGACACCAACATTTTATACTCTTGTAAAGTGTCCTATATTGATGCAATCTTGGGGACTACACTCAAGGTTCCAACTGTAGATGGCATGGTGGATTTAAAAATCCCTGCTGGTACACAACCGGGATCAACACTCGTTATGGCTAAGAAAGGAGTTCCACTGCTGAACAAAAAGAACATGAGGGGTGATCAATTGGTTCGAGTGCAAGTTGAGATTCCGAAGAAACTGAGCAGCGATGAGAGAAAACTTATCGAAGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCGGCCGGTAGGAGATGA 1320 0.4614 MAVTPFGNTSATQWGIRPQLIARSSTVPKFASASQNATSKVNFMAASSSTFFARDSLRFSIGSYQTLHRRRGSRFIVRAETDYYTVLGVSRNSTKSEIKTAYRKLARNYHPDVNKEPGAEDKFKEISNAYEVLSDDEKRSIYDKYGEAGLKGQGMGGMGDFSNPFDLFETLFEGMGGGGMGSRGSWNGAVDGEDEYYSLLLNFKEAVFGVEKEIEIRRLENCGTCDGSGAKPGTKSSTCKTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCGTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNTGRRGGSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTLKVPTVDGMVDLKIPAGTQPGSTLVMAKKGVPLLNKKNMRGDQLVRVQVEIPKKLSSDERKLIEELSELSKGKTAAGRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03196 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Vivi3g03196 439 Hamap Chaperone protein DnaJ [dnaJ]. 79 435 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi3g03196 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 344 IPR008971 GO:0006457|GO:0051082
Vivi3g03196 439 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 289 IPR036410 -
Vivi3g03196 439 ProSiteProfiles Zinc finger CR-type profile. 209 290 IPR001305 GO:0031072|GO:0051082
Vivi3g03196 439 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vivi3g03196 439 FunFam Putative Mitochondrial DnaJ chaperone 280 327 - -
Vivi3g03196 439 CDD DnaJ_zf 222 285 IPR001305 GO:0031072|GO:0051082
Vivi3g03196 439 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 44 435 - -
Vivi3g03196 439 Pfam DnaJ central domain 222 285 IPR001305 GO:0031072|GO:0051082
Vivi3g03196 439 NCBIfam molecular chaperone DnaJ 82 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi3g03196 439 Gene3D DnaJ domain 79 185 IPR036869 -
Vivi3g03196 439 CDD DnaJ_C 193 415 - -
Vivi3g03196 439 FunFam Chaperone protein dnaJ A6 chloroplastic 79 184 - -
Vivi3g03196 439 Pfam DnaJ domain 82 143 IPR001623 -
Vivi3g03196 439 SUPERFAMILY Chaperone J-domain 79 181 IPR036869 -
Vivi3g03196 439 FunFam Chaperone protein dnaJ 1, mitochondrial 332 438 - -
Vivi3g03196 439 Pfam DnaJ C terminal domain 197 412 IPR002939 -
Vivi3g03196 439 SMART dnaj_3 81 138 IPR001623 -
Vivi3g03196 439 Gene3D - 222 285 - -
Vivi3g03196 439 FunFam Molecular chaperone DnaJ 214 290 - -
Vivi3g03196 439 Gene3D - 192 327 - -
Vivi3g03196 439 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vivi3g03196 439 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vivi3g03196 439 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vivi3g03196 439 PRINTS DnaJ domain signature 138 157 IPR001623 -
Vivi3g03196 439 CDD DnaJ 82 135 IPR001623 -
Vivi3g03196 439 Gene3D - 332 438 - -
Vivi3g03196 439 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03196 Vivi-Chr3 54281834 54288259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03196 83 145 C2H2 Transcription Factor Family AT1G74250 42.029 4.76e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03196 K03686 - gmx:100786143 726.087