LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g03194	ATGCTTCGCCCAGCCAGCTTACAAACTGGAACAAAAATCAATTCACTAGCTTTTATGGGATTGACTGGAACCTTGACACCAAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAAGGGAATCACATCTCTGGTGAGATACCAAAAGAATTTGGAAATCTTACCAGCTTAGTGAGATTGGATCTGGAAAACAACATGTTAACCGGTGAAATACCGTCTTCCCTTGGTAATCTTAAAAGGCTTCAATTCTTGACATTGAGTCAGAACAATCTCAAAGGGATTATTCCAGAATCACTTAGCAGTGTCCCAAACTTGATCAATCTTCTGTTAGATTCAAATGATCTTAGAGGACAGATTCCGGAGCAGTTATTCAATGTTCCTAAGTACAATTTCACTGGAAATAAGTTGAATTGTGGCGTGGGTTATCAGCATCTTTGCATATCTGATAGTGAAAATCAAGGTTCTTCACATAAATCAAAAATAGGCCTCGTAGTTGGAACAGTTATAGGTTTAATTCTTCTTCTTTTTCTTGGTAGCGTTTTGTTTTTCTGGTGCAAAGGATACAAGCGTGAAGTATATGAAGATGTTCCAGGTGAAGTTGATCGGCGAATTACATTAGGTCAAATAAAAAAGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAACGAGAAAAATGTATTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGATTTAGCTGATGGTACAAAAATTGCAGTAAAACGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAGGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGCCTCATTGGGTTTTGTTCTACTCCAACTGAACGCCTCTTAGTTTATCCTTTCATGGAAAACTTAAGTGTTGCTTCTCGACTACGAGAGCTCAAACCTGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACGGCCCGAGGCCTTGAATATCTTCATGAACAATGTGATCCTAAAATTATTCATAGAGATGTAAAGGCAGCAAACATATTATTAGATGGAGATTTTGAAGCAGTTGTCGGGGACTTTGGTTTGGCAAAACTGGTTGATGTTCAAAGGACTAACGTGACAACTCAAATTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCTACAGGAAAGTCTTCAGAAAAGACAGATGTTTTTAGTTACGGGGTTATGCTTTTGGAGCTTGTAACAGGTCAACGTGCGATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTGAAGAAGCTACAGCGGGAGAAAAAACTAGATGCTATTGTTGACAGCAACCTTAAAAAAGAGTACAACATAGAAGAGGTTGAAATGATAGTACAGGTTGCATTACTGTGCGCACAAGCTATGCCAGAGGAACGTCCGGCAATGTCAGAGGTTGTAAGAATGTTAGAGGGAGAAGGGCTGACTGAAAGATGGGAAGAATGGCAGCATGTGGAGGTTACTCGGAGGCAAGACACAGAGAGACTGCAAAGAAGATTTGCATGGGGAGAAGATTCGATTCATAACCAAGAGGCCATCGAGTTGTCGGGTGGAAGATGA	1650	0.4085	MLRPASLQTGTKINSLAFMGLTGTLTPRIGALKSLTTLSLQGNHISGEIPKEFGNLTSLVRLDLENNMLTGEIPSSLGNLKRLQFLTLSQNNLKGIIPESLSSVPNLINLLLDSNDLRGQIPEQLFNVPKYNFTGNKLNCGVGYQHLCISDSENQGSSHKSKIGLVVGTVIGLILLLFLGSVLFFWCKGYKREVYEDVPGEVDRRITLGQIKKFSWRELQIATDNFNEKNVLGQGGFGKVYKGDLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMENLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVQRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKKEYNIEEVEMIVQVALLCAQAMPEERPAMSEVVRMLEGEGLTERWEEWQHVEVTRRQDTERLQRRFAWGEDSIHNQEAIELSGGR	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g03194	549	ProSiteProfiles	Protein kinase domain profile.	226	505	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g03194	549	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	349	361	IPR008271	GO:0004672\|GO:0006468
	Vivi3g03194	549	SUPERFAMILY	L domain-like	16	138	-	-
	Vivi3g03194	549	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	16	511	-	-
	Vivi3g03194	549	Gene3D	Phosphorylase Kinase; domain 1	195	302	-	-
	Vivi3g03194	549	SUPERFAMILY	Protein kinase-like (PK-like)	204	501	IPR011009	-
	Vivi3g03194	549	ProSitePatterns	Protein kinases ATP-binding region signature.	232	254	IPR017441	GO:0005524
	Vivi3g03194	549	SMART	serkin_6	226	500	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g03194	549	Gene3D	Ribonuclease Inhibitor	6	149	IPR032675	-
	Vivi3g03194	549	Gene3D	Transferase(Phosphotransferase) domain 1	303	520	-	-
	Vivi3g03194	549	FunFam	Somatic embryogenesis receptor kinase 1	195	302	-	-
	Vivi3g03194	549	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	26	148	-	-
	Vivi3g03194	549	SMART	LRR_typ_2	80	103	IPR003591	-
	Vivi3g03194	549	SMART	LRR_typ_2	56	79	IPR003591	-
	Vivi3g03194	549	SMART	LRR_typ_2	104	128	IPR003591	-
	Vivi3g03194	549	SMART	LRR_typ_2	32	55	IPR003591	-
	Vivi3g03194	549	FunFam	Somatic embryogenesis receptor-like kinase 1	303	520	-	-
	Vivi3g03194	549	Pfam	Protein kinase domain	226	498	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g03194	Vivi-Chr3	54261052	54264976	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g03194	15	549	Receptor kinase-like Gene Family	AT5G10290	73.655	0.0	787

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vivi3g03194		Pkinase	3.7e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g03194	-		-	gmx:100786654	863.218