Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03181 ATGGAAGAAAGGTATGAAACTATTAAAGATATTGGGTCAGGAAATTTTGGAGTAGCAAAACTTGTGAGGGAGAGACAAAGTGGTAAACTATATGCTATCAAAATCATTGAGAGAGGACTCAAGATTGATGAACATGTGCAAAGAGAGATTATCAATCATAGGTCCTTGAAGCATCCCAATATCGTTCGATTTAAAGAGGTTCTATGTACTCCGCTTCATCTAGTTATAGTAATGGAGTATGCTGCGGGAGGGGAATTATTCGAAAAAATATGCAGTGCCGGTAGATTTGATGAAGACGAGGCAAGATATTTTTTTCAGCAGTTGATTTCTGGAGTCAGCTATTGTCATTCAATGGAAATTTGCCATAGAGATCTTAAGTTGGAAAATACACTTTTAGATGGAAGCTCTTCTCCACAACTTAAAATATGTGACTTTGGATATTCTAAGTCTTCTGTTCTACATTCTCAGCCTAAATCAACGGTGGGAACTCCGGCATATATTGCACCAGAGGTTTTGTCAAGAAGAGAATATGATGGAAAGGTTGCTGATGTTTGGTCTTGTGGGGTTACATTGTATGTGATGCTTGTTGGTGGTTATCCTTTTGAAGATCCAGATGATCCAAGAAATTTTAGAAAAACAATCGAGCGAATTCTTAGGGTCCATTACTCTATTCCAGACTATGTTCGCGTTTCAAAAGATTGTAGAAATCTTCTATCTCGAATATTCGTGGCAGATCCTGAAAAGAGAATCACTATCCCAGAAATTAAAATGCATCCATGGTTCCTTAAGAAATTGCCAAATGAATTAGTGGAGGATGAAAAGCAAAAGTTAGAAAATGATGGAAATTGTGTGGATGATTCATCATCTCAGAGTATTGAAGAAATATCATCGATAATTCAAGAGGCAAGAAAGCCAGGTGAAGGACCAAAACTTGATGGACAATTTGTTGGAGGAGAAATGGATTTTGATGAAATGGATGAAGATGATGATTTTGATAATGATATAGAAACAAGTGATGATTTTGAGTATGTTTGTGATATGTGA 1044 0.364 MEERYETIKDIGSGNFGVAKLVRERQSGKLYAIKIIERGLKIDEHVQREIINHRSLKHPNIVRFKEVLCTPLHLVIVMEYAAGGELFEKICSAGRFDEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSSPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIERILRVHYSIPDYVRVSKDCRNLLSRIFVADPEKRITIPEIKMHPWFLKKLPNELVEDEKQKLENDGNCVDDSSSQSIEEISSIIQEARKPGEGPKLDGQFVGGEMDFDEMDEDDDFDNDIETSDDFEYVCDM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03181 347 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Vivi3g03181 347 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Vivi3g03181 347 MobiDBLite consensus disorder prediction 319 338 - -
Vivi3g03181 347 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03181 347 PANTHER SERINE/THREONINE KINASE 3 290 - -
Vivi3g03181 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vivi3g03181 347 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03181 347 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03181 347 SUPERFAMILY Protein kinase-like (PK-like) 3 270 IPR011009 -
Vivi3g03181 347 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vivi3g03181 347 CDD STKc_SnRK2 4 260 - -
Vivi3g03181 347 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Vivi3g03181 347 MobiDBLite consensus disorder prediction 302 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03181 Vivi-Chr3 54032725 54035485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03181 4 294 CBL-interacting serine-threonine protein kinases AT4G24400 41.528 1.27e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi3g03181 Pkinase 5.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03181 K14498 - gmx:100807981 547.74