Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03177 ATGGCAAAGCAGATCCACGAGATCAAGGAATTTCTTTTGACGGCGCGTAGAAAGGACGCGAGATCTGTGAAAATCAAGAGGAATAAGGATGTGCCAAAGCCTCGGGTTGATTACACTCTGAAGGAAGTTTGTGGAAGTTTGCCGGCACTTCCTAGAATTTCATATATGATTGATGATACTATGAACTCAATTGTTACTGATATGCTCCAATGGCCTCAAAGGATTGTTGTGCCACTTGGTGGTATTCTTGTGAAAACTAGGTTGTAA 267 0.4195 MAKQIHEIKEFLLTARRKDARSVKIKRNKDVPKPRVDYTLKEVCGSLPALPRISYMIDDTMNSIVTDMLQWPQRIVVPLGGILVKTRL 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03177 88 Gene3D - 1 42 IPR038464 -
Vivi3g03177 88 PANTHER 60S RIBOSOMAL PROTEIN L38 1 36 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi3g03177 88 Pfam Ribosomal L38e protein family 3 31 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03177 Vivi-Chr3 53994273 53995841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03177 1 36 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 80.556 1.31e-13 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03177 - - vvo:131635195 120.553