Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03171 ATGCTTCACCCAGCCAGCTTACAAACTGGAACAAAAATCAATTCACTAGCTTTTATGGGATTGACTGGAACCTTGACACCGAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAAGGGAATCGCATCACTGGTGAGATACCAAAAGAATTTGGAAATCTTACCAGCTTAGTGAGATTGGATCTGGAAAACAACATGTTAACCGGTGAAATACCGTCTTCCCTTGGTAATCTTAAAAGGCTTCAATTCTTGACATTGAGTCAGAACAATCTCAAAGGGACTATTCCTGAATCACTTAGCAGTGTCCCAAACTTGATCAATCTTCTGTTAGATTCAAATGATCTTAGAGGACAGATTCCAGAGCAGTTATTCAATGTTCCTAAGTACAATTTCACTGGAAATAAGTTGAATTGTGGCGTGGGTTATCAGCACCTTTGCATATCTGATAGTGCAAATGAAGGTTCTTCACACAAATCAAAAATAGGCCTCATAGTTGGAACAGTTATAGGTTTAATTCTTCTTCTTTTTCTTGGTAGCGTTTTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGAAGATGTTCCAGGTGAAGTTGATCGGCGAATCACATTAGGTCAAATAAAAAAGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAACGAGAAAAATGTATTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGATTTAGCAGATGGGACAAAAATTGCAGTAAAACGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAGGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGCCTCATTGGATTTTGTTCTACTCCAACTGAACGCCTCTTAGTTTATCCTTTCATGGAAAACTTAAGTGTTGCTTCTCGACTACGAGAGCTCAAACCTGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACGGCCCGAGGCCTTGAATATCTTCATGAACAATGTGATCCTAAAATTATTCATAGAGATGTAAAGGCAGCAAACATATTATTAGATGGAGATTTTGAAGCAGTTGTCGGGGACTTTGGTTTGGCAAAACTGGTTGATGTTCAAAGGACTAACGTGACAACTCAAATTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCTACAGGAAAGTCTTCAGAAAAGACAGATGTTTTTAGTTACGGGGTTATGCTTTTGGAGCTTGTAACAGGTCAACGTGCGATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTGAAGAAGCTACAGCGGGAGAAAAAACTAGATGCTATTGTTGACAGCAACCTTAAAAAAGAGTACAACATAGAAGAGGTTGAAATGATAGTACAGGTTGCATTACTGTGCGCACAAGCTATGCCAGAGGAACGTCCGGCAATGTCAGAGGTAGTAAGAATGTTGGAGGGAGAAGGGCTGACTGAAAGGTGGGAAGAATGGCAGCATGTGGAGGTTACTCGGAGGCAAGACACAGAGAGACTGCAAAGAAGATTTGCATGGGGAGAAGATTCGATTCATAACCAAGAGGCCATCGAGTTGTCGGGTGGAAGATGA 1650 0.4127 MLHPASLQTGTKINSLAFMGLTGTLTPRIGALKSLTTLSLQGNRITGEIPKEFGNLTSLVRLDLENNMLTGEIPSSLGNLKRLQFLTLSQNNLKGTIPESLSSVPNLINLLLDSNDLRGQIPEQLFNVPKYNFTGNKLNCGVGYQHLCISDSANEGSSHKSKIGLIVGTVIGLILLLFLGSVLFFWCKGYKREVFEDVPGEVDRRITLGQIKKFSWRELQIATDNFNEKNVLGQGGFGKVYKGDLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMENLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVQRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKKEYNIEEVEMIVQVALLCAQAMPEERPAMSEVVRMLEGEGLTERWEEWQHVEVTRRQDTERLQRRFAWGEDSIHNQEAIELSGGR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03171 549 Gene3D Transferase(Phosphotransferase) domain 1 303 520 - -
Vivi3g03171 549 ProSiteProfiles Protein kinase domain profile. 226 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03171 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
Vivi3g03171 549 Gene3D Phosphorylase Kinase; domain 1 195 302 - -
Vivi3g03171 549 FunFam Somatic embryogenesis receptor kinase 1 195 302 - -
Vivi3g03171 549 SUPERFAMILY Protein kinase-like (PK-like) 204 501 IPR011009 -
Vivi3g03171 549 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 148 - -
Vivi3g03171 549 ProSitePatterns Protein kinases ATP-binding region signature. 232 254 IPR017441 GO:0005524
Vivi3g03171 549 SMART serkin_6 226 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03171 549 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 511 - -
Vivi3g03171 549 SUPERFAMILY L domain-like 16 138 - -
Vivi3g03171 549 Pfam Leucine Rich repeats (2 copies) 33 73 IPR025875 -
Vivi3g03171 549 FunFam Somatic embryogenesis receptor-like kinase 1 303 520 - -
Vivi3g03171 549 Gene3D Ribonuclease Inhibitor 6 149 IPR032675 -
Vivi3g03171 549 Pfam Protein kinase domain 226 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03171 Vivi-Chr3 53930763 53935174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03171 15 549 Receptor kinase-like Gene Family AT5G10290 74.583 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi3g03171 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03171 - - gmx:100786654 865.914